RNA–Protein interactions for RNA: ENST00000357517.6

PCDH1-202, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 3,307 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-202ENST00000357517 GSPT1P15170 499 aaKnown RBP12.49□□□□□ -0.41
PCDH1-202ENST00000357517 ZSCAN26Q16670 478 aa12.49□□□□□ -0.41
PCDH1-202ENST00000357517 DNAJC21Q5F1R6 531 aaKnown RBP12.49□□□□□ -0.41
PCDH1-202ENST00000357517 TTLL5Q6EMB2 1281 aa12.49□□□□□ -0.41
PCDH1-202ENST00000357517 ZMYM3Q14202 1370 aa12.49□□□□□ -0.41
PCDH1-202ENST00000357517 URB2Q14146 1524 aaKnown RBP12.49□□□□□ -0.41
PCDH1-202ENST00000357517 CKAP2LQ8IYA6 745 aa12.49□□□□□ -0.41
PCDH1-202ENST00000357517 OTUD7AQ8TE49 926 aaPredicted RBP12.49□□□□□ -0.41
PCDH1-202ENST00000357517 SMARCE1Q969G3 411 aa12.49□□□□□ -0.41
PCDH1-202ENST00000357517 ZBTB40Q9NUA8 1239 aa12.49□□□□□ -0.41
PCDH1-202ENST00000357517 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.49□□□□□ -0.41
PCDH1-202ENST00000357517 ARID5BQ14865 1188 aa12.48□□□□□ -0.41
PCDH1-202ENST00000357517 NFATC2IPQ8NCF5 419 aa12.48□□□□□ -0.41
PCDH1-202ENST00000357517 YY1AP1Q9H869 796 aa12.48□□□□□ -0.41
PCDH1-202ENST00000357517 LMAN1P49257 510 aa12.48□□□□□ -0.41
PCDH1-202ENST00000357517 BMS1Q14692 1282 aaKnown RBP12.48□□□□□ -0.41
PCDH1-202ENST00000357517 RUNDC1Q96C34 613 aa12.48□□□□□ -0.41
PCDH1-202ENST00000357517 SPAG9O60271 1321 aaKnown RBP12.48□□□□□ -0.41
PCDH1-202ENST00000357517 JRKLQ9Y4A0 524 aa12.47□□□□□ -0.41
PCDH1-202ENST00000357517 KIAA0586Q9BVV6 1533 aa12.47□□□□□ -0.41
PCDH1-202ENST00000357517 PTPN14Q15678 1187 aa12.47□□□□□ -0.41
PCDH1-202ENST00000357517 PAXBP1Q9Y5B6 917 aa12.47□□□□□ -0.41
PCDH1-202ENST00000357517 MAGI2Q86UL8 1455 aa12.47□□□□□ -0.41
PCDH1-202ENST00000357517 MX1P20591 662 aa12.47□□□□□ -0.41
PCDH1-202ENST00000357517 FILIP1Q7Z7B0 1213 aa12.47□□□□□ -0.41
PCDH1-202ENST00000357517 HTATSF1O43719 755 aaKnown RBP12.46□□□□□ -0.41
PCDH1-202ENST00000357517 SEC31AO94979 1220 aaKnown RBP12.46□□□□□ -0.41
PCDH1-202ENST00000357517 GOLGA6L1Q8N7Z2 621 aa12.46□□□□□ -0.41
PCDH1-202ENST00000357517 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.46□□□□□ -0.42
PCDH1-202ENST00000357517 NCAPGQ9BPX3 1015 aa12.46□□□□□ -0.42
PCDH1-202ENST00000357517 FAM135AQ9P2D6 1515 aa12.46□□□□□ -0.42
PCDH1-202ENST00000357517 BRD1O95696 1058 aa12.45□□□□□ -0.42
PCDH1-202ENST00000357517 MORC1Q86VD1 984 aa12.45□□□□□ -0.42
PCDH1-202ENST00000357517 LRRN4CLQ8ND94 238 aa12.45□□□□□ -0.42
PCDH1-202ENST00000357517 FBXW7Q969H0 707 aa12.45□□□□□ -0.42
PCDH1-202ENST00000357517 SLC26A8Q96RN1 970 aa12.45□□□□□ -0.42
PCDH1-202ENST00000357517 DEF6Q9H4E7 631 aa12.45□□□□□ -0.42
PCDH1-202ENST00000357517 NPC1L1Q9UHC9 1359 aa12.45□□□□□ -0.42
PCDH1-202ENST00000357517 CACTINQ8WUQ7 758 aaKnown RBP12.45□□□□□ -0.42
PCDH1-202ENST00000357517 EPC1Q9H2F5 836 aa12.45□□□□□ -0.42
PCDH1-202ENST00000357517 ARHGAP29Q52LW3 1261 aa12.44□□□□□ -0.42
PCDH1-202ENST00000357517 INTS3Q68E01 1043 aaKnown RBP12.44□□□□□ -0.42
PCDH1-202ENST00000357517 ATAD2Q6PL18 1390 aa12.44□□□□□ -0.42
PCDH1-202ENST00000357517 UHRF1BP1Q6BDS2 1440 aa12.44□□□□□ -0.42
PCDH1-202ENST00000357517 CLCN6P51797 869 aa12.44□□□□□ -0.42
PCDH1-202ENST00000357517 TSHZ3Q63HK5 1081 aa12.44□□□□□ -0.42
PCDH1-202ENST00000357517 ZSCAN25Q6NSZ9 544 aa12.44□□□□□ -0.42
PCDH1-202ENST00000357517 CASC1Q6TDU7 716 aa12.44□□□□□ -0.42
PCDH1-202ENST00000357517 CARD10Q9BWT7 1032 aa12.44□□□□□ -0.42
PCDH1-202ENST00000357517 RRP15Q9Y3B9 282 aaKnown RBP12.44□□□□□ -0.42
PCDH1-202ENST00000357517 LAMC3Q9Y6N6 1575 aa12.44□□□□□ -0.42
PCDH1-202ENST00000357517 TPM3P06753 285 aa12.43□□□□□ -0.42
PCDH1-202ENST00000357517 IBSPP21815 317 aaPredicted RBP12.43□□□□□ -0.42
PCDH1-202ENST00000357517 GPS2Q13227 327 aa12.43□□□□□ -0.42
PCDH1-202ENST00000357517 TTC31Q49AM3 519 aaPredicted RBP12.43□□□□□ -0.42
PCDH1-202ENST00000357517 TXLNBQ8N3L3 684 aa12.43□□□□□ -0.42
PCDH1-202ENST00000357517 CLIP2Q9UDT6 1046 aa12.43□□□□□ -0.42
PCDH1-202ENST00000357517 ROCK1Q13464 1354 aa12.43□□□□□ -0.42
PCDH1-202ENST00000357517 ANKRD36BQ8N2N9 1353 aa12.43□□□□□ -0.42
PCDH1-202ENST00000357517 PNMA6AP0CW24 399 aaPredicted RBP12.43□□□□□ -0.42
PCDH1-202ENST00000357517 SRCIN1Q9C0H9 1055 aa12.43□□□□□ -0.42
PCDH1-202ENST00000357517 PLEKHA4Q9H4M7 779 aa12.43□□□□□ -0.42
PCDH1-202ENST00000357517 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.43□□□□□ -0.42
PCDH1-202ENST00000357517 REC8O95072 547 aa12.42□□□□□ -0.42
PCDH1-202ENST00000357517 PLA2G4AP47712 749 aa12.42□□□□□ -0.42
PCDH1-202ENST00000357517 GNL2Q13823 731 aaKnown RBP12.42□□□□□ -0.42
PCDH1-202ENST00000357517 CEP83Q9Y592 693 aa12.42□□□□□ -0.42
PCDH1-202ENST00000357517 COL17A1Q9UMD9 1497 aaPredicted RBP12.42□□□□□ -0.42
PCDH1-202ENST00000357517 SLU7O95391 586 aaKnown RBP12.42□□□□□ -0.42
PCDH1-202ENST00000357517 GUCY2CP25092 1073 aa12.42□□□□□ -0.42
PCDH1-202ENST00000357517 PACS2Q86VP3 889 aa12.42□□□□□ -0.42
PCDH1-202ENST00000357517 KIF1BPQ96EK5 621 aa12.42□□□□□ -0.42
PCDH1-202ENST00000357517 CCDC192P0DO97 292 aa12.41□□□□□ -0.42
PCDH1-202ENST00000357517 SDSP20132 328 aa12.41□□□□□ -0.42
PCDH1-202ENST00000357517 BRPF1P55201 1214 aaPredicted RBP12.41□□□□□ -0.42
PCDH1-202ENST00000357517 TMCO3Q6UWJ1 677 aa12.41□□□□□ -0.42
PCDH1-202ENST00000357517 CWC15Q9P013 229 aaKnown RBP12.41□□□□□ -0.42
PCDH1-202ENST00000357517 STK26Q9P289 416 aa12.41□□□□□ -0.42
PCDH1-202ENST00000357517 FHOD1Q9Y613 1164 aa12.41□□□□□ -0.42
PCDH1-202ENST00000357517 CCDC172P0C7W6 258 aa12.41□□□□□ -0.42
PCDH1-202ENST00000357517 OAS2P29728 719 aaKnown RBP12.41□□□□□ -0.42
PCDH1-202ENST00000357517 MTHFSP49914 203 aa12.41□□□□□ -0.42
PCDH1-202ENST00000357517 TPM4P67936 248 aa12.41□□□□□ -0.42
PCDH1-202ENST00000357517 CCDC144BQ3MJ40 725 aa12.41□□□□□ -0.42
PCDH1-202ENST00000357517 PLEKHM2Q8IWE5 1019 aa12.41□□□□□ -0.42
PCDH1-202ENST00000357517 WDR63Q8IWG1 891 aa12.41□□□□□ -0.42
PCDH1-202ENST00000357517 CCDC144CPQ8IYA2 1237 aa12.41□□□□□ -0.42
PCDH1-202ENST00000357517 ANO2Q9NQ90 1003 aa12.41□□□□□ -0.42
PCDH1-202ENST00000357517 IPO8O15397 1037 aaKnown RBP12.4□□□□□ -0.42
PCDH1-202ENST00000357517 SYCP1Q15431 976 aa12.4□□□□□ -0.42
PCDH1-202ENST00000357517 EGFL6Q8IUX8 553 aa12.4□□□□□ -0.42
PCDH1-202ENST00000357517 FAM177A1Q8N128 213 aaPredicted RBP12.4□□□□□ -0.42
PCDH1-202ENST00000357517 ERO1AQ96HE7 468 aa12.4□□□□□ -0.42
PCDH1-202ENST00000357517 SKILP12757 684 aa12.4□□□□□ -0.42
PCDH1-202ENST00000357517 GPRASP1Q5JY77 1395 aa12.4□□□□□ -0.43
PCDH1-202ENST00000357517 GOLIM4O00461 696 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 TDO2P48775 406 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 ANO6Q4KMQ2 910 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 SRLQ86TD4 932 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 CCAR2Q8N163 923 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms