RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 EVA1CP58658 441 aa23.66■■□□□ 1.38
SMARCD3-202ENST00000356800 CARD10Q9BWT7 1032 aa23.66■■□□□ 1.38
SMARCD3-202ENST00000356800 LRRC37A3O60309 1634 aa23.66■■□□□ 1.38
SMARCD3-202ENST00000356800 MAP3K5Q99683 1374 aa23.65■■□□□ 1.38
SMARCD3-202ENST00000356800 PLEKHO1Q53GL0 409 aaPredicted RBP23.65■■□□□ 1.38
SMARCD3-202ENST00000356800 RAPGEF4Q8WZA2 1011 aa23.65■■□□□ 1.38
SMARCD3-202ENST00000356800 MYH16Q9H6N6 1097 aa23.65■■□□□ 1.38
SMARCD3-202ENST00000356800 VIRMAQ69YN4 1812 aaKnown RBP23.65■■□□□ 1.38
SMARCD3-202ENST00000356800 PKD1L3Q7Z443 1732 aa23.65■■□□□ 1.38
SMARCD3-202ENST00000356800 FANCIQ9NVI1 1328 aa23.64■■□□□ 1.38
SMARCD3-202ENST00000356800 AMOTQ4VCS5 1084 aa23.64■■□□□ 1.38
SMARCD3-202ENST00000356800 TSR2Q969E8 191 aaKnown RBP23.64■■□□□ 1.38
SMARCD3-202ENST00000356800 PARP4Q9UKK3 1724 aaKnown RBP23.64■■□□□ 1.37
SMARCD3-202ENST00000356800 GNAT3A8MTJ3 354 aa23.64■■□□□ 1.37
SMARCD3-202ENST00000356800 CALD1Q05682 793 aaKnown RBP23.64■■□□□ 1.37
SMARCD3-202ENST00000356800 RCAN3Q9UKA8 241 aa23.64■■□□□ 1.37
SMARCD3-202ENST00000356800 CRB1P82279 1406 aa23.63■■□□□ 1.37
SMARCD3-202ENST00000356800 NWD2Q9ULI1 1742 aa23.63■■□□□ 1.37
SMARCD3-202ENST00000356800 HTATSF1O43719 755 aaKnown RBP23.63■■□□□ 1.37
SMARCD3-202ENST00000356800 NEFLP07196 543 aa23.63■■□□□ 1.37
SMARCD3-202ENST00000356800 ZNF853P0CG23 659 aa23.63■■□□□ 1.37
SMARCD3-202ENST00000356800 TATP17735 454 aaPredicted RBP23.63■■□□□ 1.37
SMARCD3-202ENST00000356800 ZNF530Q6P9A1 599 aaPredicted RBP23.62■■□□□ 1.37
SMARCD3-202ENST00000356800 PLEKHG2Q9H7P9 1386 aa23.62■■□□□ 1.37
SMARCD3-202ENST00000356800 LRP6O75581 1613 aa23.62■■□□□ 1.37
SMARCD3-202ENST00000356800 RTF1Q92541 710 aaKnown RBP23.61■■□□□ 1.37
SMARCD3-202ENST00000356800 IFT57Q9NWB7 429 aa23.61■■□□□ 1.37
SMARCD3-202ENST00000356800 RNF123Q5XPI4 1314 aa23.61■■□□□ 1.37
SMARCD3-202ENST00000356800 OVOS2A0A0G2JMS6 1433 aa23.61■■□□□ 1.37
SMARCD3-202ENST00000356800 IL17REQ8NFR9 667 aa23.6■■□□□ 1.37
SMARCD3-202ENST00000356800 SLIT2O94813 1529 aa23.6■■□□□ 1.37
SMARCD3-202ENST00000356800 SPATA31A6Q5VVP1 1343 aa23.6■■□□□ 1.37
SMARCD3-202ENST00000356800 LAS1LQ9Y4W2 734 aaKnown RBP23.6■■□□□ 1.37
SMARCD3-202ENST00000356800 GNAI1P63096 354 aa23.59■■□□□ 1.37
SMARCD3-202ENST00000356800 AKAP4Q5JQC9 854 aa23.59■■□□□ 1.37
SMARCD3-202ENST00000356800 CFAP44Q96MT7 982 aa23.59■■□□□ 1.37
SMARCD3-202ENST00000356800 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.59■■□□□ 1.37
SMARCD3-202ENST00000356800 ADAMTS7Q9UKP4 1686 aa23.58■■□□□ 1.36
SMARCD3-202ENST00000356800 MBIPQ9NS73 344 aa23.57■■□□□ 1.36
SMARCD3-202ENST00000356800 SHANK3Q9BYB0 1731 aa23.57■■□□□ 1.36
SMARCD3-202ENST00000356800 CEMIPQ8WUJ3 1361 aa23.57■■□□□ 1.36
SMARCD3-202ENST00000356800 WNK3Q9BYP7 1800 aa23.56■■□□□ 1.36
SMARCD3-202ENST00000356800 EXOSC9Q06265 439 aaKnown RBP23.56■■□□□ 1.36
SMARCD3-202ENST00000356800 SPG7Q9UQ90 795 aa23.56■■□□□ 1.36
SMARCD3-202ENST00000356800 CHL1O00533 1208 aa23.55■■□□□ 1.36
SMARCD3-202ENST00000356800 FKBP8Q14318 412 aa23.55■■□□□ 1.36
SMARCD3-202ENST00000356800 C1orf141Q5JVX7 400 aa23.55■■□□□ 1.36
SMARCD3-202ENST00000356800 LGR6Q9HBX8 967 aa23.55■■□□□ 1.36
SMARCD3-202ENST00000356800 USP35Q9P2H5 1018 aa23.55■■□□□ 1.36
SMARCD3-202ENST00000356800 IL2RBP14784 551 aa23.54■■□□□ 1.36
SMARCD3-202ENST00000356800 SCN11AQ9UI33 1791 aa23.54■■□□□ 1.36
SMARCD3-202ENST00000356800 MPRIPQ6WCQ1 1025 aa23.53■■□□□ 1.36
SMARCD3-202ENST00000356800 DISP2A7MBM2 1401 aa23.52■■□□□ 1.36
SMARCD3-202ENST00000356800 CYP27B1O15528 508 aa23.52■■□□□ 1.36
SMARCD3-202ENST00000356800 PHKG2P15735 406 aa23.52■■□□□ 1.36
SMARCD3-202ENST00000356800 C8orf37Q96NL8 207 aa23.52■■□□□ 1.36
SMARCD3-202ENST00000356800 SIPA1L3O60292 1781 aaPredicted RBP23.52■■□□□ 1.36
SMARCD3-202ENST00000356800 BCL9LQ86UU0 1499 aa23.51■■□□□ 1.35
SMARCD3-202ENST00000356800 RNMTO43148 476 aaKnown RBP23.51■■□□□ 1.35
SMARCD3-202ENST00000356800 MIS18AQ9NYP9 233 aa23.51■■□□□ 1.35
SMARCD3-202ENST00000356800 KDM6AO15550 1401 aaPredicted RBP23.5■■□□□ 1.35
SMARCD3-202ENST00000356800 ZCRB1Q8TBF4 217 aaKnown RBP23.5■■□□□ 1.35
SMARCD3-202ENST00000356800 NGLY1Q96IV0 654 aa23.5■■□□□ 1.35
SMARCD3-202ENST00000356800 RRP1P56182 461 aaKnown RBP23.49■■□□□ 1.35
SMARCD3-202ENST00000356800 IFNL2Q8IZJ0 200 aa23.49■■□□□ 1.35
SMARCD3-202ENST00000356800 SPATA31A1Q5TZJ5 1347 aa23.49■■□□□ 1.35
SMARCD3-202ENST00000356800 IRX6P78412 446 aaPredicted RBP23.48■■□□□ 1.35
SMARCD3-202ENST00000356800 ERICH6BQ5W0A0 696 aa23.48■■□□□ 1.35
SMARCD3-202ENST00000356800 FNBP4Q8N3X1 1017 aaPredicted RBP23.48■■□□□ 1.35
SMARCD3-202ENST00000356800 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.48■■□□□ 1.35
SMARCD3-202ENST00000356800 SPATA31A5Q5VU36 1347 aa23.48■■□□□ 1.35
SMARCD3-202ENST00000356800 SPATA31A7Q8IWB4 1347 aa23.48■■□□□ 1.35
SMARCD3-202ENST00000356800 CT47B1P0C2W7 299 aaPredicted RBP23.48■■□□□ 1.35
SMARCD3-202ENST00000356800 TAF7Q15545 349 aaPredicted RBP23.48■■□□□ 1.35
SMARCD3-202ENST00000356800 UNC5CLQ8IV45 518 aa23.48■■□□□ 1.35
SMARCD3-202ENST00000356800 KDM3BQ7LBC6 1761 aa23.47■■□□□ 1.35
SMARCD3-202ENST00000356800 BCAR3O75815 825 aa23.47■■□□□ 1.35
SMARCD3-202ENST00000356800 RARSP54136 660 aaKnown RBP23.47■■□□□ 1.35
SMARCD3-202ENST00000356800 TSPYL6Q8N831 410 aa23.47■■□□□ 1.35
SMARCD3-202ENST00000356800 TSPYL4Q9UJ04 414 aa23.47■■□□□ 1.35
SMARCD3-202ENST00000356800 PCDH11XQ9BZA7 1347 aa23.46■■□□□ 1.35
SMARCD3-202ENST00000356800 PCDH11YQ9BZA8 1340 aa23.46■■□□□ 1.35
SMARCD3-202ENST00000356800 C8orf58Q8NAV2 365 aa23.46■■□□□ 1.35
SMARCD3-202ENST00000356800 KRT24Q2M2I5 525 aa23.44■■□□□ 1.34
SMARCD3-202ENST00000356800 BABAM1Q9NWV8 329 aa23.44■■□□□ 1.34
SMARCD3-202ENST00000356800 PLIN1O60240 522 aa23.44■■□□□ 1.34
SMARCD3-202ENST00000356800 TEFQ10587 303 aa23.44■■□□□ 1.34
SMARCD3-202ENST00000356800 VAMP4O75379 141 aa23.43■■□□□ 1.34
SMARCD3-202ENST00000356800 DCAF5Q96JK2 942 aa23.43■■□□□ 1.34
SMARCD3-202ENST00000356800 THRAP3Q9Y2W1 955 aaKnown RBP23.43■■□□□ 1.34
SMARCD3-202ENST00000356800 MRC1P22897 1456 aa23.42■■□□□ 1.34
SMARCD3-202ENST00000356800 ELL2O00472 640 aaPredicted RBP23.41■■□□□ 1.34
SMARCD3-202ENST00000356800 HSP90AB1P08238 724 aaKnown RBP23.41■■□□□ 1.34
SMARCD3-202ENST00000356800 VPS72Q15906 364 aa23.41■■□□□ 1.34
SMARCD3-202ENST00000356800 TWISTNBQ3B726 338 aaPredicted RBP23.41■■□□□ 1.34
SMARCD3-202ENST00000356800 MEX3CQ5U5Q3 659 aaKnown RBP23.41■■□□□ 1.34
SMARCD3-202ENST00000356800 NKX1-1Q15270 411 aaPredicted RBP23.41■■□□□ 1.34
SMARCD3-202ENST00000356800 DDX54Q8TDD1 881 aaKnown RBP23.41■■□□□ 1.34
SMARCD3-202ENST00000356800 BCL2L13Q9BXK5 485 aa23.41■■□□□ 1.34
SMARCD3-202ENST00000356800 USP21Q9UK80 565 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms