RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 BMP2KLQ5H9B9 411 aa27.3■■□□□ 1.96
SHMT1-202ENST00000352886 AMPHP49418 695 aa27.29■■□□□ 1.96
SHMT1-202ENST00000352886 INTS3Q68E01 1043 aaKnown RBP27.29■■□□□ 1.96
SHMT1-202ENST00000352886 FOXO3O43524 673 aa27.28■■□□□ 1.96
SHMT1-202ENST00000352886 MTHFSDQ2M296 383 aaKnown RBP27.28■■□□□ 1.96
SHMT1-202ENST00000352886 RGS12O14924 1447 aa27.28■■□□□ 1.96
SHMT1-202ENST00000352886 KDRP35968 1356 aa27.26■■□□□ 1.95
SHMT1-202ENST00000352886 KCNA6P17658 529 aa27.26■■□□□ 1.95
SHMT1-202ENST00000352886 RTF1Q92541 710 aaKnown RBP27.26■■□□□ 1.95
SHMT1-202ENST00000352886 CEP170BQ9Y4F5 1589 aaPredicted RBP27.25■■□□□ 1.95
SHMT1-202ENST00000352886 EYA1Q99502 592 aa27.25■■□□□ 1.95
SHMT1-202ENST00000352886 MIS18AQ9NYP9 233 aa27.25■■□□□ 1.95
SHMT1-202ENST00000352886 NLRP6P59044 892 aa27.25■■□□□ 1.95
SHMT1-202ENST00000352886 IGSF1Q8N6C5 1336 aa27.24■■□□□ 1.95
SHMT1-202ENST00000352886 ANKARQ7Z5J8 1434 aa27.23■■□□□ 1.95
SHMT1-202ENST00000352886 SPRYD3Q8NCJ5 442 aa27.23■■□□□ 1.95
SHMT1-202ENST00000352886 PTPRCP08575 1304 aa27.23■■□□□ 1.95
SHMT1-202ENST00000352886 RBM25P49756 843 aaKnown RBP27.22■■□□□ 1.95
SHMT1-202ENST00000352886 TSPYL4Q9UJ04 414 aa27.21■■□□□ 1.95
SHMT1-202ENST00000352886 MSH6P52701 1360 aa27.21■■□□□ 1.95
SHMT1-202ENST00000352886 MARF1Q9Y4F3 1742 aaKnown RBP27.2■■□□□ 1.95
SHMT1-202ENST00000352886 ATP10DQ9P241 1426 aa27.2■■□□□ 1.94
SHMT1-202ENST00000352886 SLC4A2P04920 1241 aa27.2■■□□□ 1.94
SHMT1-202ENST00000352886 NUTM2GQ5VZR2 741 aa27.2■■□□□ 1.94
SHMT1-202ENST00000352886 DCTPP1Q9H773 170 aa27.2■■□□□ 1.94
SHMT1-202ENST00000352886 GAS2L2Q8NHY3 880 aa27.19■■□□□ 1.94
SHMT1-202ENST00000352886 ANKRD44Q8N8A2 993 aa27.18■■□□□ 1.94
SHMT1-202ENST00000352886 HSCBQ8IWL3 235 aa27.17■■□□□ 1.94
SHMT1-202ENST00000352886 HOXC9P31274 260 aa27.16■■□□□ 1.94
SHMT1-202ENST00000352886 TBC1D9Q6ZT07 1266 aa27.16■■□□□ 1.94
SHMT1-202ENST00000352886 RPAP2Q8IXW5 612 aaPredicted RBP27.16■■□□□ 1.94
SHMT1-202ENST00000352886 CEP85Q6P2H3 762 aa27.15■■□□□ 1.94
SHMT1-202ENST00000352886 RTL1A6NKG5 1358 aa27.15■■□□□ 1.94
SHMT1-202ENST00000352886 ABTB2Q8N961 1025 aa27.15■■□□□ 1.94
SHMT1-202ENST00000352886 MEIS3Q99687 375 aa27.15■■□□□ 1.94
SHMT1-202ENST00000352886 USP54Q70EL1 1684 aa27.14■■□□□ 1.93
SHMT1-202ENST00000352886 PLEKHM2Q8IWE5 1019 aa27.14■■□□□ 1.93
SHMT1-202ENST00000352886 G2E3Q7L622 706 aa27.12■■□□□ 1.93
SHMT1-202ENST00000352886 LRRC37A3O60309 1634 aa27.12■■□□□ 1.93
SHMT1-202ENST00000352886 GSPT1P15170 499 aaKnown RBP27.12■■□□□ 1.93
SHMT1-202ENST00000352886 HTATSF1O43719 755 aaKnown RBP27.11■■□□□ 1.93
SHMT1-202ENST00000352886 NWD1Q149M9 1564 aa27.11■■□□□ 1.93
SHMT1-202ENST00000352886 GNAT3A8MTJ3 354 aa27.1■■□□□ 1.93
SHMT1-202ENST00000352886 CDC45O75419 566 aa27.1■■□□□ 1.93
SHMT1-202ENST00000352886 SLC4A10Q6U841 1118 aa27.09■■□□□ 1.93
SHMT1-202ENST00000352886 C16orf71Q8IYS4 520 aaPredicted RBP27.09■■□□□ 1.93
SHMT1-202ENST00000352886 SNX21Q969T3 373 aa27.09■■□□□ 1.93
SHMT1-202ENST00000352886 LTV1Q96GA3 475 aaPredicted RBP27.09■■□□□ 1.93
SHMT1-202ENST00000352886 ANO8Q9HCE9 1232 aaPredicted RBP27.09■■□□□ 1.93
SHMT1-202ENST00000352886 CHMP5Q9NZZ3 219 aa27.09■■□□□ 1.93
SHMT1-202ENST00000352886 F6X3S4 739 aa27.09■■□□□ 1.93
SHMT1-202ENST00000352886 C14orf37Q86TY3 774 aa27.09■■□□□ 1.93
SHMT1-202ENST00000352886 CHD2O14647 1828 aaKnown RBP27.08■■□□□ 1.93
SHMT1-202ENST00000352886 KIF2CQ99661 725 aa27.08■■□□□ 1.93
SHMT1-202ENST00000352886 TTC22Q5TAA0 569 aa27.07■■□□□ 1.92
SHMT1-202ENST00000352886 LTN1O94822 1766 aa27.06■■□□□ 1.92
SHMT1-202ENST00000352886 STK31Q9BXU1 1019 aa27.06■■□□□ 1.92
SHMT1-202ENST00000352886 TRHP20396 242 aaPredicted RBP27.06■■□□□ 1.92
SHMT1-202ENST00000352886 CCT4P50991 539 aaKnown RBP27.06■■□□□ 1.92
SHMT1-202ENST00000352886 PHF8Q9UPP1 1060 aa27.06■■□□□ 1.92
SHMT1-202ENST00000352886 APBB1O00213 710 aa27.05■■□□□ 1.92
SHMT1-202ENST00000352886 FAM208AQ9UK61 1670 aaKnown RBP27.05■■□□□ 1.92
SHMT1-202ENST00000352886 NCOA3Q9Y6Q9 1424 aa27.05■■□□□ 1.92
SHMT1-202ENST00000352886 MAP3K5Q99683 1374 aa27.05■■□□□ 1.92
SHMT1-202ENST00000352886 OTUD7AQ8TE49 926 aaPredicted RBP27.05■■□□□ 1.92
SHMT1-202ENST00000352886 SMARCA5O60264 1052 aaPredicted RBP27.04■■□□□ 1.92
SHMT1-202ENST00000352886 RBM33Q96EV2 1170 aaKnown RBP27.04■■□□□ 1.92
SHMT1-202ENST00000352886 IL17REQ8NFR9 667 aa27.03■■□□□ 1.92
SHMT1-202ENST00000352886 ANKLE2Q86XL3 938 aa27.02■■□□□ 1.92
SHMT1-202ENST00000352886 IL27Q8NEV9 243 aa27.02■■□□□ 1.92
SHMT1-202ENST00000352886 CCDC30Q5VVM6 783 aa27.01■■□□□ 1.92
SHMT1-202ENST00000352886 USHBP1Q8N6Y0 703 aa27.01■■□□□ 1.92
SHMT1-202ENST00000352886 HMMRO75330 724 aa27.01■■□□□ 1.91
SHMT1-202ENST00000352886 CACNA1FO60840 1977 aa27.01■■□□□ 1.91
SHMT1-202ENST00000352886 SETD1BQ9UPS6 1966 aaKnown RBP27■■□□□ 1.91
SHMT1-202ENST00000352886 MCM4P33991 863 aa27■■□□□ 1.91
SHMT1-202ENST00000352886 FLIIQ13045 1269 aa27■■□□□ 1.91
SHMT1-202ENST00000352886 NECTIN2Q92692 538 aa27■■□□□ 1.91
SHMT1-202ENST00000352886 HSP90AB1P08238 724 aaKnown RBP27■■□□□ 1.91
SHMT1-202ENST00000352886 FKBP5Q13451 457 aaPredicted RBP26.99■■□□□ 1.91
SHMT1-202ENST00000352886 DDIT3P35638 169 aa26.98■■□□□ 1.91
SHMT1-202ENST00000352886 TAF7Q15545 349 aaPredicted RBP26.98■■□□□ 1.91
SHMT1-202ENST00000352886 CD2BP2O95400 341 aaKnown RBP26.98■■□□□ 1.91
SHMT1-202ENST00000352886 RBM42Q9BTD8 480 aaKnown RBP26.97■■□□□ 1.91
SHMT1-202ENST00000352886 BRPF3Q9ULD4 1205 aa26.97■■□□□ 1.91
SHMT1-202ENST00000352886 EIF5BO60841 1220 aaKnown RBP26.96■■□□□ 1.91
SHMT1-202ENST00000352886 GNAI2P04899 355 aa26.96■■□□□ 1.91
SHMT1-202ENST00000352886 ZNF142P52746 1687 aaPredicted RBP26.96■■□□□ 1.91
SHMT1-202ENST00000352886 SDSP20132 328 aa26.96■■□□□ 1.91
SHMT1-202ENST00000352886 IP6K1Q92551 441 aa26.96■■□□□ 1.91
SHMT1-202ENST00000352886 BABAM1Q9NWV8 329 aa26.95■■□□□ 1.9
SHMT1-202ENST00000352886 NFAT5O94916 1531 aa26.95■■□□□ 1.9
SHMT1-202ENST00000352886 ESCO1Q5FWF5 840 aa26.95■■□□□ 1.9
SHMT1-202ENST00000352886 SOS1Q07889 1333 aaPredicted RBP26.94■■□□□ 1.9
SHMT1-202ENST00000352886 PSME1Q06323 249 aa26.94■■□□□ 1.9
SHMT1-202ENST00000352886 K7ELQ4 463 aaPredicted RBP26.92■■□□□ 1.9
SHMT1-202ENST00000352886 ADGRL3Q9HAR2 1447 aa26.92■■□□□ 1.9
SHMT1-202ENST00000352886 NBPF6Q5VWK0 638 aa26.91■■□□□ 1.9
SHMT1-202ENST00000352886 NBPF4Q96M43 638 aa26.91■■□□□ 1.9
SHMT1-202ENST00000352886 HSP90AA1P07900 732 aaKnown RBP26.91■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms