RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 MCM10Q7L590 875 aa27.73■■■□□ 2.03
UPF3A-201ENST00000351487 THEMISQ8N1K5 641 aaPredicted RBP27.73■■■□□ 2.03
UPF3A-201ENST00000351487 MARF1Q9Y4F3 1742 aaKnown RBP27.72■■■□□ 2.03
UPF3A-201ENST00000351487 PTPRCP08575 1304 aa27.7■■■□□ 2.03
UPF3A-201ENST00000351487 ATP10DQ9P241 1426 aa27.7■■■□□ 2.02
UPF3A-201ENST00000351487 KRT24Q2M2I5 525 aa27.69■■■□□ 2.02
UPF3A-201ENST00000351487 IGSF1Q8N6C5 1336 aa27.69■■■□□ 2.02
UPF3A-201ENST00000351487 NGDNQ8NEJ9 315 aaKnown RBP27.69■■■□□ 2.02
UPF3A-201ENST00000351487 LRRC37A3O60309 1634 aa27.69■■■□□ 2.02
UPF3A-201ENST00000351487 CEP170BQ9Y4F5 1589 aaPredicted RBP27.68■■■□□ 2.02
UPF3A-201ENST00000351487 SOX12O15370 315 aa27.67■■■□□ 2.02
UPF3A-201ENST00000351487 DCTPP1Q9H773 170 aa27.66■■■□□ 2.02
UPF3A-201ENST00000351487 MTHFSDQ2M296 383 aaKnown RBP27.65■■■□□ 2.02
UPF3A-201ENST00000351487 ANKRD44Q8N8A2 993 aa27.64■■■□□ 2.01
UPF3A-201ENST00000351487 MSH6P52701 1360 aa27.64■■■□□ 2.01
UPF3A-201ENST00000351487 NCOA3Q9Y6Q9 1424 aa27.64■■■□□ 2.01
UPF3A-201ENST00000351487 SNX21Q969T3 373 aa27.63■■■□□ 2.01
UPF3A-201ENST00000351487 AMPHP49418 695 aa27.62■■■□□ 2.01
UPF3A-201ENST00000351487 HSCBQ8IWL3 235 aa27.62■■■□□ 2.01
UPF3A-201ENST00000351487 RPAP2Q8IXW5 612 aaPredicted RBP27.62■■■□□ 2.01
UPF3A-201ENST00000351487 GAS2L2Q8NHY3 880 aa27.62■■■□□ 2.01
UPF3A-201ENST00000351487 EYA1Q99502 592 aa27.62■■■□□ 2.01
UPF3A-201ENST00000351487 RTF1Q92541 710 aaKnown RBP27.61■■■□□ 2.01
UPF3A-201ENST00000351487 NWD1Q149M9 1564 aa27.61■■■□□ 2.01
UPF3A-201ENST00000351487 RTL1A6NKG5 1358 aa27.6■■■□□ 2.01
UPF3A-201ENST00000351487 FOXO3O43524 673 aa27.6■■■□□ 2.01
UPF3A-201ENST00000351487 TBC1D9Q6ZT07 1266 aa27.6■■■□□ 2.01
UPF3A-201ENST00000351487 HTATSF1O43719 755 aaKnown RBP27.59■■■□□ 2.01
UPF3A-201ENST00000351487 CEP85Q6P2H3 762 aa27.59■■■□□ 2.01
UPF3A-201ENST00000351487 CHMP5Q9NZZ3 219 aa27.59■■■□□ 2.01
UPF3A-201ENST00000351487 KCNA6P17658 529 aa27.58■■■□□ 2.01
UPF3A-201ENST00000351487 TSPYL4Q9UJ04 414 aa27.58■■■□□ 2.01
UPF3A-201ENST00000351487 FAM208AQ9UK61 1670 aaKnown RBP27.58■■■□□ 2
UPF3A-201ENST00000351487 PLEKHM2Q8IWE5 1019 aa27.57■■■□□ 2
UPF3A-201ENST00000351487 NLRP6P59044 892 aa27.57■■■□□ 2
UPF3A-201ENST00000351487 SLC4A2P04920 1241 aa27.56■■■□□ 2
UPF3A-201ENST00000351487 CDC45O75419 566 aa27.56■■■□□ 2
UPF3A-201ENST00000351487 PLPPR3Q6T4P5 718 aa27.56■■■□□ 2
UPF3A-201ENST00000351487 CACNA1FO60840 1977 aa27.56■■■□□ 2
UPF3A-201ENST00000351487 KIF2CQ99661 725 aa27.55■■■□□ 2
UPF3A-201ENST00000351487 GSPT1P15170 499 aaKnown RBP27.55■■■□□ 2
UPF3A-201ENST00000351487 HOXC9P31274 260 aa27.55■■■□□ 2
UPF3A-201ENST00000351487 CHD2O14647 1828 aaKnown RBP27.54■■■□□ 2
UPF3A-201ENST00000351487 EIF5BO60841 1220 aaKnown RBP27.54■■■□□ 2
UPF3A-201ENST00000351487 MIS18AQ9NYP9 233 aa27.54■■■□□ 2
UPF3A-201ENST00000351487 MEIS3Q99687 375 aa27.53■■■□□ 2
UPF3A-201ENST00000351487 SPRYD3Q8NCJ5 442 aa27.53■■■□□ 2
UPF3A-201ENST00000351487 DDIT3P35638 169 aa27.52■■■□□ 2
UPF3A-201ENST00000351487 N4BP2Q86UW6 1770 aaPredicted RBP27.52■■■□□ 2
UPF3A-201ENST00000351487 TTC22Q5TAA0 569 aa27.52■■■□□ 2
UPF3A-201ENST00000351487 LTN1O94822 1766 aa27.51■■□□□ 1.99
UPF3A-201ENST00000351487 CCT4P50991 539 aaKnown RBP27.5■■□□□ 1.99
UPF3A-201ENST00000351487 SOS1Q07889 1333 aaPredicted RBP27.49■■□□□ 1.99
UPF3A-201ENST00000351487 GNAT3A8MTJ3 354 aa27.49■■□□□ 1.99
UPF3A-201ENST00000351487 ZNF142P52746 1687 aaPredicted RBP27.48■■□□□ 1.99
UPF3A-201ENST00000351487 MCM4P33991 863 aa27.48■■□□□ 1.99
UPF3A-201ENST00000351487 G2E3Q7L622 706 aa27.48■■□□□ 1.99
UPF3A-201ENST00000351487 MAP3K5Q99683 1374 aa27.48■■□□□ 1.99
UPF3A-201ENST00000351487 ABTB2Q8N961 1025 aa27.47■■□□□ 1.99
UPF3A-201ENST00000351487 BABAM1Q9NWV8 329 aa27.47■■□□□ 1.99
UPF3A-201ENST00000351487 IL27Q8NEV9 243 aa27.46■■□□□ 1.99
UPF3A-201ENST00000351487 HMMRO75330 724 aa27.45■■□□□ 1.99
UPF3A-201ENST00000351487 STK31Q9BXU1 1019 aa27.45■■□□□ 1.98
UPF3A-201ENST00000351487 CIZ1Q9ULV3 898 aaPredicted RBP27.45■■□□□ 1.98
UPF3A-201ENST00000351487 C16orf71Q8IYS4 520 aaPredicted RBP27.44■■□□□ 1.98
UPF3A-201ENST00000351487 NFAT5O94916 1531 aa27.44■■□□□ 1.98
UPF3A-201ENST00000351487 NUTM2GQ5VZR2 741 aa27.43■■□□□ 1.98
UPF3A-201ENST00000351487 F6X3S4 739 aa27.43■■□□□ 1.98
UPF3A-201ENST00000351487 CCDC30Q5VVM6 783 aa27.43■■□□□ 1.98
UPF3A-201ENST00000351487 PHRF1Q9P1Y6 1649 aaKnown RBP27.42■■□□□ 1.98
UPF3A-201ENST00000351487 OTUD7AQ8TE49 926 aaPredicted RBP27.41■■□□□ 1.98
UPF3A-201ENST00000351487 BRPF3Q9ULD4 1205 aa27.41■■□□□ 1.98
UPF3A-201ENST00000351487 PHF8Q9UPP1 1060 aa27.41■■□□□ 1.98
UPF3A-201ENST00000351487 PXDNLA1KZ92 1463 aa27.41■■□□□ 1.98
UPF3A-201ENST00000351487 HSP90AB1P08238 724 aaKnown RBP27.41■■□□□ 1.98
UPF3A-201ENST00000351487 SLC4A10Q6U841 1118 aa27.41■■□□□ 1.98
UPF3A-201ENST00000351487 FLIIQ13045 1269 aa27.4■■□□□ 1.98
UPF3A-201ENST00000351487 IL17REQ8NFR9 667 aa27.4■■□□□ 1.98
UPF3A-201ENST00000351487 MED1Q15648 1581 aaPredicted RBP27.39■■□□□ 1.98
UPF3A-201ENST00000351487 K7ELQ4 463 aaPredicted RBP27.39■■□□□ 1.98
UPF3A-201ENST00000351487 CD2BP2O95400 341 aaKnown RBP27.39■■□□□ 1.97
UPF3A-201ENST00000351487 GNAI2P04899 355 aa27.38■■□□□ 1.97
UPF3A-201ENST00000351487 TUBGCP6Q96RT7 1819 aa27.38■■□□□ 1.97
UPF3A-201ENST00000351487 SMARCA5O60264 1052 aaPredicted RBP27.37■■□□□ 1.97
UPF3A-201ENST00000351487 TAF7Q15545 349 aaPredicted RBP27.37■■□□□ 1.97
UPF3A-201ENST00000351487 OSBPL3Q9H4L5 887 aa27.37■■□□□ 1.97
UPF3A-201ENST00000351487 ADGRL3Q9HAR2 1447 aa27.37■■□□□ 1.97
UPF3A-201ENST00000351487 SDSP20132 328 aa27.37■■□□□ 1.97
UPF3A-201ENST00000351487 DDX11L8A8MPP1 907 aa27.36■■□□□ 1.97
UPF3A-201ENST00000351487 ANKLE2Q86XL3 938 aa27.36■■□□□ 1.97
UPF3A-201ENST00000351487 CEMIPQ8WUJ3 1361 aa27.35■■□□□ 1.97
UPF3A-201ENST00000351487 GNAI3P08754 354 aa27.35■■□□□ 1.97
UPF3A-201ENST00000351487 IP6K1Q92551 441 aa27.35■■□□□ 1.97
UPF3A-201ENST00000351487 FKBP5Q13451 457 aaPredicted RBP27.35■■□□□ 1.97
UPF3A-201ENST00000351487 RABEP1Q15276 862 aa27.35■■□□□ 1.97
UPF3A-201ENST00000351487 USP26Q9BXU7 913 aa27.35■■□□□ 1.97
UPF3A-201ENST00000351487 KDM3BQ7LBC6 1761 aa27.34■■□□□ 1.97
UPF3A-201ENST00000351487 CASC1Q6TDU7 716 aa27.34■■□□□ 1.97
UPF3A-201ENST00000351487 LTV1Q96GA3 475 aaPredicted RBP27.34■■□□□ 1.97
UPF3A-201ENST00000351487 RBM42Q9BTD8 480 aaKnown RBP27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms