RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 MCM10Q7L590 875 aa27.73■■■□□ 2.03
UPF3A-201ENST00000351487 THEMISQ8N1K5 641 aaPredicted RBP27.73■■■□□ 2.03
UPF3A-201ENST00000351487 MARF1Q9Y4F3 1742 aaKnown RBP27.72■■■□□ 2.03
UPF3A-201ENST00000351487 PTPRCP08575 1304 aa27.7■■■□□ 2.03
UPF3A-201ENST00000351487 ATP10DQ9P241 1426 aa27.7■■■□□ 2.02
UPF3A-201ENST00000351487 KRT24Q2M2I5 525 aa27.69■■■□□ 2.02
UPF3A-201ENST00000351487 IGSF1Q8N6C5 1336 aa27.69■■■□□ 2.02
UPF3A-201ENST00000351487 NGDNQ8NEJ9 315 aaKnown RBP27.69■■■□□ 2.02
UPF3A-201ENST00000351487 LRRC37A3O60309 1634 aa27.69■■■□□ 2.02
UPF3A-201ENST00000351487 CEP170BQ9Y4F5 1589 aaPredicted RBP27.68■■■□□ 2.02
UPF3A-201ENST00000351487 SOX12O15370 315 aa27.67■■■□□ 2.02
UPF3A-201ENST00000351487 DCTPP1Q9H773 170 aa27.66■■■□□ 2.02
UPF3A-201ENST00000351487 MTHFSDQ2M296 383 aaKnown RBP27.65■■■□□ 2.02
UPF3A-201ENST00000351487 ANKRD44Q8N8A2 993 aa27.64■■■□□ 2.01
UPF3A-201ENST00000351487 MSH6P52701 1360 aa27.64■■■□□ 2.01
UPF3A-201ENST00000351487 NCOA3Q9Y6Q9 1424 aa27.64■■■□□ 2.01
UPF3A-201ENST00000351487 SNX21Q969T3 373 aa27.63■■■□□ 2.01
UPF3A-201ENST00000351487 AMPHP49418 695 aa27.62■■■□□ 2.01
UPF3A-201ENST00000351487 HSCBQ8IWL3 235 aa27.62■■■□□ 2.01
UPF3A-201ENST00000351487 RPAP2Q8IXW5 612 aaPredicted RBP27.62■■■□□ 2.01
UPF3A-201ENST00000351487 GAS2L2Q8NHY3 880 aa27.62■■■□□ 2.01
UPF3A-201ENST00000351487 EYA1Q99502 592 aa27.62■■■□□ 2.01
UPF3A-201ENST00000351487 RTF1Q92541 710 aaKnown RBP27.61■■■□□ 2.01
UPF3A-201ENST00000351487 NWD1Q149M9 1564 aa27.61■■■□□ 2.01
UPF3A-201ENST00000351487 RTL1A6NKG5 1358 aa27.6■■■□□ 2.01
UPF3A-201ENST00000351487 FOXO3O43524 673 aa27.6■■■□□ 2.01
UPF3A-201ENST00000351487 TBC1D9Q6ZT07 1266 aa27.6■■■□□ 2.01
UPF3A-201ENST00000351487 HTATSF1O43719 755 aaKnown RBP27.59■■■□□ 2.01
UPF3A-201ENST00000351487 CEP85Q6P2H3 762 aa27.59■■■□□ 2.01
UPF3A-201ENST00000351487 CHMP5Q9NZZ3 219 aa27.59■■■□□ 2.01
UPF3A-201ENST00000351487 KCNA6P17658 529 aa27.58■■■□□ 2.01
UPF3A-201ENST00000351487 TSPYL4Q9UJ04 414 aa27.58■■■□□ 2.01
UPF3A-201ENST00000351487 FAM208AQ9UK61 1670 aaKnown RBP27.58■■■□□ 2
UPF3A-201ENST00000351487 PLEKHM2Q8IWE5 1019 aa27.57■■■□□ 2
UPF3A-201ENST00000351487 NLRP6P59044 892 aa27.57■■■□□ 2
UPF3A-201ENST00000351487 SLC4A2P04920 1241 aa27.56■■■□□ 2
UPF3A-201ENST00000351487 CDC45O75419 566 aa27.56■■■□□ 2
UPF3A-201ENST00000351487 PLPPR3Q6T4P5 718 aa27.56■■■□□ 2
UPF3A-201ENST00000351487 CACNA1FO60840 1977 aa27.56■■■□□ 2
UPF3A-201ENST00000351487 KIF2CQ99661 725 aa27.55■■■□□ 2
UPF3A-201ENST00000351487 GSPT1P15170 499 aaKnown RBP27.55■■■□□ 2
UPF3A-201ENST00000351487 HOXC9P31274 260 aa27.55■■■□□ 2
UPF3A-201ENST00000351487 CHD2O14647 1828 aaKnown RBP27.54■■■□□ 2
UPF3A-201ENST00000351487 EIF5BO60841 1220 aaKnown RBP27.54■■■□□ 2
UPF3A-201ENST00000351487 MIS18AQ9NYP9 233 aa27.54■■■□□ 2
UPF3A-201ENST00000351487 MEIS3Q99687 375 aa27.53■■■□□ 2
UPF3A-201ENST00000351487 SPRYD3Q8NCJ5 442 aa27.53■■■□□ 2
UPF3A-201ENST00000351487 DDIT3P35638 169 aa27.52■■■□□ 2
UPF3A-201ENST00000351487 N4BP2Q86UW6 1770 aaPredicted RBP27.52■■■□□ 2
UPF3A-201ENST00000351487 TTC22Q5TAA0 569 aa27.52■■■□□ 2
UPF3A-201ENST00000351487 LTN1O94822 1766 aa27.51■■□□□ 1.99
UPF3A-201ENST00000351487 CCT4P50991 539 aaKnown RBP27.5■■□□□ 1.99
UPF3A-201ENST00000351487 SOS1Q07889 1333 aaPredicted RBP27.49■■□□□ 1.99
UPF3A-201ENST00000351487 GNAT3A8MTJ3 354 aa27.49■■□□□ 1.99
UPF3A-201ENST00000351487 ZNF142P52746 1687 aaPredicted RBP27.48■■□□□ 1.99
UPF3A-201ENST00000351487 MCM4P33991 863 aa27.48■■□□□ 1.99
UPF3A-201ENST00000351487 G2E3Q7L622 706 aa27.48■■□□□ 1.99
UPF3A-201ENST00000351487 MAP3K5Q99683 1374 aa27.48■■□□□ 1.99
UPF3A-201ENST00000351487 ABTB2Q8N961 1025 aa27.47■■□□□ 1.99
UPF3A-201ENST00000351487 BABAM1Q9NWV8 329 aa27.47■■□□□ 1.99
UPF3A-201ENST00000351487 IL27Q8NEV9 243 aa27.46■■□□□ 1.99
UPF3A-201ENST00000351487 HMMRO75330 724 aa27.45■■□□□ 1.99
UPF3A-201ENST00000351487 STK31Q9BXU1 1019 aa27.45■■□□□ 1.98
UPF3A-201ENST00000351487 CIZ1Q9ULV3 898 aaPredicted RBP27.45■■□□□ 1.98
UPF3A-201ENST00000351487 C16orf71Q8IYS4 520 aaPredicted RBP27.44■■□□□ 1.98
UPF3A-201ENST00000351487 NFAT5O94916 1531 aa27.44■■□□□ 1.98
UPF3A-201ENST00000351487 NUTM2GQ5VZR2 741 aa27.43■■□□□ 1.98
UPF3A-201ENST00000351487 F6X3S4 739 aa27.43■■□□□ 1.98
UPF3A-201ENST00000351487 CCDC30Q5VVM6 783 aa27.43■■□□□ 1.98
UPF3A-201ENST00000351487 PHRF1Q9P1Y6 1649 aaKnown RBP27.42■■□□□ 1.98
UPF3A-201ENST00000351487 OTUD7AQ8TE49 926 aaPredicted RBP27.41■■□□□ 1.98
UPF3A-201ENST00000351487 BRPF3Q9ULD4 1205 aa27.41■■□□□ 1.98
UPF3A-201ENST00000351487 PHF8Q9UPP1 1060 aa27.41■■□□□ 1.98
UPF3A-201ENST00000351487 PXDNLA1KZ92 1463 aa27.41■■□□□ 1.98
UPF3A-201ENST00000351487 HSP90AB1P08238 724 aaKnown RBP27.41■■□□□ 1.98
UPF3A-201ENST00000351487 SLC4A10Q6U841 1118 aa27.41■■□□□ 1.98
UPF3A-201ENST00000351487 FLIIQ13045 1269 aa27.4■■□□□ 1.98
UPF3A-201ENST00000351487 IL17REQ8NFR9 667 aa27.4■■□□□ 1.98
UPF3A-201ENST00000351487 MED1Q15648 1581 aaPredicted RBP27.39■■□□□ 1.98
UPF3A-201ENST00000351487 K7ELQ4 463 aaPredicted RBP27.39■■□□□ 1.98
UPF3A-201ENST00000351487 CD2BP2O95400 341 aaKnown RBP27.39■■□□□ 1.97
UPF3A-201ENST00000351487 GNAI2P04899 355 aa27.38■■□□□ 1.97
UPF3A-201ENST00000351487 TUBGCP6Q96RT7 1819 aa27.38■■□□□ 1.97
UPF3A-201ENST00000351487 SMARCA5O60264 1052 aaPredicted RBP27.37■■□□□ 1.97
UPF3A-201ENST00000351487 TAF7Q15545 349 aaPredicted RBP27.37■■□□□ 1.97
UPF3A-201ENST00000351487 OSBPL3Q9H4L5 887 aa27.37■■□□□ 1.97
UPF3A-201ENST00000351487 ADGRL3Q9HAR2 1447 aa27.37■■□□□ 1.97
UPF3A-201ENST00000351487 SDSP20132 328 aa27.37■■□□□ 1.97
UPF3A-201ENST00000351487 DDX11L8A8MPP1 907 aa27.36■■□□□ 1.97
UPF3A-201ENST00000351487 ANKLE2Q86XL3 938 aa27.36■■□□□ 1.97
UPF3A-201ENST00000351487 CEMIPQ8WUJ3 1361 aa27.35■■□□□ 1.97
UPF3A-201ENST00000351487 GNAI3P08754 354 aa27.35■■□□□ 1.97
UPF3A-201ENST00000351487 IP6K1Q92551 441 aa27.35■■□□□ 1.97
UPF3A-201ENST00000351487 FKBP5Q13451 457 aaPredicted RBP27.35■■□□□ 1.97
UPF3A-201ENST00000351487 RABEP1Q15276 862 aa27.35■■□□□ 1.97
UPF3A-201ENST00000351487 USP26Q9BXU7 913 aa27.35■■□□□ 1.97
UPF3A-201ENST00000351487 KDM3BQ7LBC6 1761 aa27.34■■□□□ 1.97
UPF3A-201ENST00000351487 CASC1Q6TDU7 716 aa27.34■■□□□ 1.97
UPF3A-201ENST00000351487 LTV1Q96GA3 475 aaPredicted RBP27.34■■□□□ 1.97
UPF3A-201ENST00000351487 RBM42Q9BTD8 480 aaKnown RBP27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms