RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 RNF214Q8ND24 703 aa13.61□□□□□ -0.23
SYNE1-202ENST00000347037 DCTPP1Q9H773 170 aa13.61□□□□□ -0.23
SYNE1-202ENST00000347037 IBTKQ9P2D0 1353 aaPredicted RBP13.61□□□□□ -0.23
SYNE1-202ENST00000347037 NEXMIFQ5QGS0 1516 aa13.61□□□□□ -0.23
SYNE1-202ENST00000347037 SYCE3A1L190 88 aa13.6□□□□□ -0.23
SYNE1-202ENST00000347037 GPT2Q8TD30 523 aa13.6□□□□□ -0.23
SYNE1-202ENST00000347037 CFAP44Q96MT7 982 aa13.6□□□□□ -0.23
SYNE1-202ENST00000347037 PIK3R4Q99570 1358 aa13.6□□□□□ -0.23
SYNE1-202ENST00000347037 STAG3Q9UJ98 1225 aa13.59□□□□□ -0.23
SYNE1-202ENST00000347037 KRT24Q2M2I5 525 aa13.59□□□□□ -0.23
SYNE1-202ENST00000347037 FOXD4L6Q3SYB3 417 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-202ENST00000347037 FOXD4L3Q6VB84 417 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-202ENST00000347037 CWC22Q9HCG8 908 aaKnown RBP13.59□□□□□ -0.23
SYNE1-202ENST00000347037 CD163L1Q9NR16 1453 aa13.59□□□□□ -0.23
SYNE1-202ENST00000347037 ZRANB1Q9UGI0 708 aa13.59□□□□□ -0.23
SYNE1-202ENST00000347037 ZFYVE9O95405 1425 aa13.59□□□□□ -0.23
SYNE1-202ENST00000347037 TPRNQ4KMQ1 711 aa13.58□□□□□ -0.23
SYNE1-202ENST00000347037 SPATA31D1Q6ZQQ2 1576 aa13.58□□□□□ -0.23
SYNE1-202ENST00000347037 RRS1Q15050 365 aaKnown RBP13.58□□□□□ -0.24
SYNE1-202ENST00000347037 SETD1AO15047 1707 aaKnown RBP13.58□□□□□ -0.24
SYNE1-202ENST00000347037 CYP2E1P05181 493 aaPredicted RBP13.58□□□□□ -0.24
SYNE1-202ENST00000347037 WAPLQ7Z5K2 1190 aa13.58□□□□□ -0.24
SYNE1-202ENST00000347037 REC8O95072 547 aa13.57□□□□□ -0.24
SYNE1-202ENST00000347037 LMOD3Q0VAK6 560 aa13.57□□□□□ -0.24
SYNE1-202ENST00000347037 YTHDC2Q9H6S0 1430 aaKnown RBP13.57□□□□□ -0.24
SYNE1-202ENST00000347037 PTMAP06454 111 aaKnown RBP13.57□□□□□ -0.24
SYNE1-202ENST00000347037 NME9Q86XW9 330 aa13.57□□□□□ -0.24
SYNE1-202ENST00000347037 NOL7Q9UMY1 257 aaKnown RBP13.57□□□□□ -0.24
SYNE1-202ENST00000347037 NSFL1CQ9UNZ2 370 aaKnown RBP13.57□□□□□ -0.24
SYNE1-202ENST00000347037 ZNF853P0CG23 659 aa13.57□□□□□ -0.24
SYNE1-202ENST00000347037 NEK4P51957 841 aa13.57□□□□□ -0.24
SYNE1-202ENST00000347037 ANKRD44Q8N8A2 993 aa13.57□□□□□ -0.24
SYNE1-202ENST00000347037 TMEM63CQ9P1W3 806 aa13.57□□□□□ -0.24
SYNE1-202ENST00000347037 ZDHHC9Q9Y397 364 aa13.57□□□□□ -0.24
SYNE1-202ENST00000347037 UQCRHLA0A096LP55 91 aa13.56□□□□□ -0.24
SYNE1-202ENST00000347037 UQCRHP07919 91 aa13.56□□□□□ -0.24
SYNE1-202ENST00000347037 IL13P35225 146 aa13.56□□□□□ -0.24
SYNE1-202ENST00000347037 CEP85Q6P2H3 762 aa13.56□□□□□ -0.24
SYNE1-202ENST00000347037 SLC4A10Q6U841 1118 aa13.55□□□□□ -0.24
SYNE1-202ENST00000347037 ERC2O15083 957 aa13.55□□□□□ -0.24
SYNE1-202ENST00000347037 TSHZ3Q63HK5 1081 aa13.55□□□□□ -0.24
SYNE1-202ENST00000347037 MEIS3Q99687 375 aa13.55□□□□□ -0.24
SYNE1-202ENST00000347037 PTPRMP28827 1452 aa13.55□□□□□ -0.24
SYNE1-202ENST00000347037 LRSAM1Q6UWE0 723 aa13.55□□□□□ -0.24
SYNE1-202ENST00000347037 HS1BP3Q53T59 392 aa13.54□□□□□ -0.24
SYNE1-202ENST00000347037 MPNDQ8N594 471 aa13.54□□□□□ -0.24
SYNE1-202ENST00000347037 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.54□□□□□ -0.24
SYNE1-202ENST00000347037 RPAP2Q8IXW5 612 aaPredicted RBP13.54□□□□□ -0.24
SYNE1-202ENST00000347037 SLC52A1Q9NWF4 448 aa13.54□□□□□ -0.24
SYNE1-202ENST00000347037 ZKSCAN5Q9Y2L8 839 aa13.54□□□□□ -0.24
SYNE1-202ENST00000347037 RIMS2Q9UQ26 1411 aa13.54□□□□□ -0.24
SYNE1-202ENST00000347037 PDLIM2Q96JY6 352 aa13.53□□□□□ -0.24
SYNE1-202ENST00000347037 MSH6P52701 1360 aa13.53□□□□□ -0.24
SYNE1-202ENST00000347037 ANKRD26Q9UPS8 1709 aa13.53□□□□□ -0.24
SYNE1-202ENST00000347037 MCM10Q7L590 875 aa13.53□□□□□ -0.24
SYNE1-202ENST00000347037 CCDC39Q9UFE4 941 aa13.53□□□□□ -0.24
SYNE1-202ENST00000347037 ZNF500O60304 480 aaPredicted RBP13.52□□□□□ -0.24
SYNE1-202ENST00000347037 TMX3Q96JJ7 454 aa13.52□□□□□ -0.24
SYNE1-202ENST00000347037 DNTTIP2Q5QJE6 756 aaKnown RBP13.52□□□□□ -0.25
SYNE1-202ENST00000347037 FBXO31Q5XUX0 539 aaPredicted RBP13.52□□□□□ -0.25
SYNE1-202ENST00000347037 COG3Q96JB2 828 aa13.52□□□□□ -0.25
SYNE1-202ENST00000347037 AEBP1Q8IUX7 1158 aa13.51□□□□□ -0.25
SYNE1-202ENST00000347037 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.51□□□□□ -0.25
SYNE1-202ENST00000347037 GDPD2Q9HCC8 539 aa13.51□□□□□ -0.25
SYNE1-202ENST00000347037 KNDC1Q76NI1 1749 aa13.51□□□□□ -0.25
SYNE1-202ENST00000347037 TRIM6-TRIM34B2RNG4 842 aa13.51□□□□□ -0.25
SYNE1-202ENST00000347037 CSPP1Q1MSJ5 1256 aa13.51□□□□□ -0.25
SYNE1-202ENST00000347037 RILPL2Q969X0 211 aa13.51□□□□□ -0.25
SYNE1-202ENST00000347037 MBD3O95983 291 aa13.5□□□□□ -0.25
SYNE1-202ENST00000347037 SLC4A2P04920 1241 aa13.5□□□□□ -0.25
SYNE1-202ENST00000347037 ANO2Q9NQ90 1003 aa13.5□□□□□ -0.25
SYNE1-202ENST00000347037 MIS18AQ9NYP9 233 aa13.5□□□□□ -0.25
SYNE1-202ENST00000347037 EXOC6BQ9Y2D4 811 aa13.5□□□□□ -0.25
SYNE1-202ENST00000347037 NCKAP5LQ9HCH0 1330 aa13.5□□□□□ -0.25
SYNE1-202ENST00000347037 F6X3S4 739 aa13.5□□□□□ -0.25
SYNE1-202ENST00000347037 HMMRO75330 724 aa13.5□□□□□ -0.25
SYNE1-202ENST00000347037 SULT6B1Q6IMI4 303 aa13.5□□□□□ -0.25
SYNE1-202ENST00000347037 ATP10DQ9P241 1426 aa13.5□□□□□ -0.25
SYNE1-202ENST00000347037 RTL1A6NKG5 1358 aa13.5□□□□□ -0.25
SYNE1-202ENST00000347037 KIF20BQ96Q89 1820 aa13.5□□□□□ -0.25
SYNE1-202ENST00000347037 TSPY26PQ9H489 355 aa13.5□□□□□ -0.25
SYNE1-202ENST00000347037 NRXN3Q9Y4C0 1643 aa13.49□□□□□ -0.25
SYNE1-202ENST00000347037 SOX12O15370 315 aa13.49□□□□□ -0.25
SYNE1-202ENST00000347037 TERF1P54274 439 aa13.49□□□□□ -0.25
SYNE1-202ENST00000347037 CDC42BPGQ6DT37 1551 aa13.49□□□□□ -0.25
SYNE1-202ENST00000347037 MAP2P11137 1827 aaKnown RBP13.49□□□□□ -0.25
SYNE1-202ENST00000347037 PDE1AP54750 535 aa13.49□□□□□ -0.25
SYNE1-202ENST00000347037 MCCP23508 829 aa13.49□□□□□ -0.25
SYNE1-202ENST00000347037 KIF24Q5T7B8 1368 aa13.49□□□□□ -0.25
SYNE1-202ENST00000347037 UPF3BQ9BZI7 483 aaKnown RBP13.48□□□□□ -0.25
SYNE1-202ENST00000347037 HAP1P54257 671 aaPredicted RBP13.48□□□□□ -0.25
SYNE1-202ENST00000347037 PALD1Q9ULE6 856 aa13.48□□□□□ -0.25
SYNE1-202ENST00000347037 SYAP1Q96A49 352 aaPredicted RBP13.47□□□□□ -0.25
SYNE1-202ENST00000347037 UBR1Q8IWV7 1749 aa13.47□□□□□ -0.25
SYNE1-202ENST00000347037 C3P01024 1663 aa13.47□□□□□ -0.25
SYNE1-202ENST00000347037 MAP7D2Q96T17 732 aa13.47□□□□□ -0.25
SYNE1-202ENST00000347037 ZNF830Q96NB3 372 aaPredicted RBP13.46□□□□□ -0.25
SYNE1-202ENST00000347037 GADD45BO75293 160 aaPredicted RBP13.46□□□□□ -0.25
SYNE1-202ENST00000347037 BRD1O95696 1058 aa13.46□□□□□ -0.25
SYNE1-202ENST00000347037 MCM5P33992 734 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms