RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 EYA1Q99502 592 aa19.41■□□□□ 0.7
UPF3B-202ENST00000345865 KDRP35968 1356 aa19.41■□□□□ 0.7
UPF3B-202ENST00000345865 ANTXR1Q9H6X2 564 aa19.41■□□□□ 0.7
UPF3B-202ENST00000345865 KIAA0232Q92628 1395 aa19.4■□□□□ 0.7
UPF3B-202ENST00000345865 MARF1Q9Y4F3 1742 aaKnown RBP19.4■□□□□ 0.7
UPF3B-202ENST00000345865 NUTM2GQ5VZR2 741 aa19.4■□□□□ 0.7
UPF3B-202ENST00000345865 INTS3Q68E01 1043 aaKnown RBP19.4■□□□□ 0.7
UPF3B-202ENST00000345865 IGSF1Q8N6C5 1336 aa19.39■□□□□ 0.7
UPF3B-202ENST00000345865 AMPHP49418 695 aa19.39■□□□□ 0.69
UPF3B-202ENST00000345865 NLRP6P59044 892 aa19.39■□□□□ 0.69
UPF3B-202ENST00000345865 KIF24Q5T7B8 1368 aa19.38■□□□□ 0.69
UPF3B-202ENST00000345865 BMP2KLQ5H9B9 411 aa19.37■□□□□ 0.69
UPF3B-202ENST00000345865 ANKARQ7Z5J8 1434 aa19.37■□□□□ 0.69
UPF3B-202ENST00000345865 GSE1Q14687 1217 aa19.35■□□□□ 0.69
UPF3B-202ENST00000345865 ATP10DQ9P241 1426 aa19.35■□□□□ 0.69
UPF3B-202ENST00000345865 SLC4A2P04920 1241 aa19.34■□□□□ 0.69
UPF3B-202ENST00000345865 HOXC9P31274 260 aa19.34■□□□□ 0.69
UPF3B-202ENST00000345865 HAP1P54257 671 aaPredicted RBP19.34■□□□□ 0.69
UPF3B-202ENST00000345865 RTF1Q92541 710 aaKnown RBP19.34■□□□□ 0.69
UPF3B-202ENST00000345865 TSPYL4Q9UJ04 414 aa19.34■□□□□ 0.69
UPF3B-202ENST00000345865 MSH6P52701 1360 aa19.33■□□□□ 0.69
UPF3B-202ENST00000345865 NWD1Q149M9 1564 aa19.33■□□□□ 0.69
UPF3B-202ENST00000345865 G2E3Q7L622 706 aa19.33■□□□□ 0.69
UPF3B-202ENST00000345865 SPRYD3Q8NCJ5 442 aa19.33■□□□□ 0.69
UPF3B-202ENST00000345865 RBM33Q96EV2 1170 aaKnown RBP19.33■□□□□ 0.69
UPF3B-202ENST00000345865 DCTPP1Q9H773 170 aa19.33■□□□□ 0.69
UPF3B-202ENST00000345865 PTPRCP08575 1304 aa19.32■□□□□ 0.68
UPF3B-202ENST00000345865 RBM25P49756 843 aaKnown RBP19.32■□□□□ 0.68
UPF3B-202ENST00000345865 ABTB2Q8N961 1025 aa19.32■□□□□ 0.68
UPF3B-202ENST00000345865 ANKRD44Q8N8A2 993 aa19.31■□□□□ 0.68
UPF3B-202ENST00000345865 MEIS3Q99687 375 aa19.31■□□□□ 0.68
UPF3B-202ENST00000345865 TRHP20396 242 aaPredicted RBP19.31■□□□□ 0.68
UPF3B-202ENST00000345865 GAS2L2Q8NHY3 880 aa19.31■□□□□ 0.68
UPF3B-202ENST00000345865 CEP85Q6P2H3 762 aa19.3■□□□□ 0.68
UPF3B-202ENST00000345865 RTL1A6NKG5 1358 aa19.3■□□□□ 0.68
UPF3B-202ENST00000345865 USP54Q70EL1 1684 aa19.3■□□□□ 0.68
UPF3B-202ENST00000345865 TBC1D9Q6ZT07 1266 aa19.3■□□□□ 0.68
UPF3B-202ENST00000345865 GSPT1P15170 499 aaKnown RBP19.29■□□□□ 0.68
UPF3B-202ENST00000345865 PLEKHM2Q8IWE5 1019 aa19.29■□□□□ 0.68
UPF3B-202ENST00000345865 C16orf71Q8IYS4 520 aaPredicted RBP19.29■□□□□ 0.68
UPF3B-202ENST00000345865 CHD2O14647 1828 aaKnown RBP19.29■□□□□ 0.68
UPF3B-202ENST00000345865 F6X3S4 739 aa19.29■□□□□ 0.68
UPF3B-202ENST00000345865 LTV1Q96GA3 475 aaPredicted RBP19.29■□□□□ 0.68
UPF3B-202ENST00000345865 LRRC37A3O60309 1634 aa19.28■□□□□ 0.68
UPF3B-202ENST00000345865 KIF2CQ99661 725 aa19.28■□□□□ 0.68
UPF3B-202ENST00000345865 RPAP2Q8IXW5 612 aaPredicted RBP19.27■□□□□ 0.68
UPF3B-202ENST00000345865 GNAT3A8MTJ3 354 aa19.26■□□□□ 0.67
UPF3B-202ENST00000345865 IL17REQ8NFR9 667 aa19.26■□□□□ 0.67
UPF3B-202ENST00000345865 OTUD7AQ8TE49 926 aaPredicted RBP19.26■□□□□ 0.67
UPF3B-202ENST00000345865 PHF8Q9UPP1 1060 aa19.26■□□□□ 0.67
UPF3B-202ENST00000345865 HTATSF1O43719 755 aaKnown RBP19.25■□□□□ 0.67
UPF3B-202ENST00000345865 C14orf37Q86TY3 774 aa19.25■□□□□ 0.67
UPF3B-202ENST00000345865 USHBP1Q8N6Y0 703 aa19.25■□□□□ 0.67
UPF3B-202ENST00000345865 SLC4A10Q6U841 1118 aa19.25■□□□□ 0.67
UPF3B-202ENST00000345865 ANKLE2Q86XL3 938 aa19.24■□□□□ 0.67
UPF3B-202ENST00000345865 LTN1O94822 1766 aa19.24■□□□□ 0.67
UPF3B-202ENST00000345865 SMARCA5O60264 1052 aaPredicted RBP19.24■□□□□ 0.67
UPF3B-202ENST00000345865 SETD1BQ9UPS6 1966 aaKnown RBP19.23■□□□□ 0.67
UPF3B-202ENST00000345865 MAP3K5Q99683 1374 aa19.22■□□□□ 0.67
UPF3B-202ENST00000345865 TTC22Q5TAA0 569 aa19.22■□□□□ 0.67
UPF3B-202ENST00000345865 NECTIN2Q92692 538 aa19.22■□□□□ 0.67
UPF3B-202ENST00000345865 APBB1O00213 710 aa19.22■□□□□ 0.67
UPF3B-202ENST00000345865 HSCBQ8IWL3 235 aa19.22■□□□□ 0.67
UPF3B-202ENST00000345865 SNX21Q969T3 373 aa19.22■□□□□ 0.67
UPF3B-202ENST00000345865 FAM208AQ9UK61 1670 aaKnown RBP19.21■□□□□ 0.67
UPF3B-202ENST00000345865 CDC45O75419 566 aa19.21■□□□□ 0.67
UPF3B-202ENST00000345865 CD2BP2O95400 341 aaKnown RBP19.2■□□□□ 0.66
UPF3B-202ENST00000345865 NCOA3Q9Y6Q9 1424 aa19.2■□□□□ 0.66
UPF3B-202ENST00000345865 NFAT5O94916 1531 aa19.2■□□□□ 0.66
UPF3B-202ENST00000345865 CCT4P50991 539 aaKnown RBP19.2■□□□□ 0.66
UPF3B-202ENST00000345865 FLIIQ13045 1269 aa19.19■□□□□ 0.66
UPF3B-202ENST00000345865 RBM42Q9BTD8 480 aaKnown RBP19.19■□□□□ 0.66
UPF3B-202ENST00000345865 STK31Q9BXU1 1019 aa19.19■□□□□ 0.66
UPF3B-202ENST00000345865 ZNF142P52746 1687 aaPredicted RBP19.19■□□□□ 0.66
UPF3B-202ENST00000345865 TAF7Q15545 349 aaPredicted RBP19.19■□□□□ 0.66
UPF3B-202ENST00000345865 ESCO1Q5FWF5 840 aa19.19■□□□□ 0.66
UPF3B-202ENST00000345865 NBPF6Q5VWK0 638 aa19.19■□□□□ 0.66
UPF3B-202ENST00000345865 IP6K1Q92551 441 aa19.19■□□□□ 0.66
UPF3B-202ENST00000345865 NBPF4Q96M43 638 aa19.19■□□□□ 0.66
UPF3B-202ENST00000345865 DDIT3P35638 169 aa19.18■□□□□ 0.66
UPF3B-202ENST00000345865 CHMP5Q9NZZ3 219 aa19.18■□□□□ 0.66
UPF3B-202ENST00000345865 CCDC30Q5VVM6 783 aa19.18■□□□□ 0.66
UPF3B-202ENST00000345865 ADGRL3Q9HAR2 1447 aa19.17■□□□□ 0.66
UPF3B-202ENST00000345865 FKBP5Q13451 457 aaPredicted RBP19.17■□□□□ 0.66
UPF3B-202ENST00000345865 IL27Q8NEV9 243 aa19.17■□□□□ 0.66
UPF3B-202ENST00000345865 RGPD2P0DJD1 1756 aa19.16■□□□□ 0.66
UPF3B-202ENST00000345865 PSME1Q06323 249 aa19.16■□□□□ 0.66
UPF3B-202ENST00000345865 SDSP20132 328 aa19.16■□□□□ 0.66
UPF3B-202ENST00000345865 CACNA1FO60840 1977 aa19.15■□□□□ 0.66
UPF3B-202ENST00000345865 CEMIPQ8WUJ3 1361 aa19.15■□□□□ 0.66
UPF3B-202ENST00000345865 MCM4P33991 863 aa19.14■□□□□ 0.66
UPF3B-202ENST00000345865 LGR6Q9HBX8 967 aa19.14■□□□□ 0.66
UPF3B-202ENST00000345865 GNAI2P04899 355 aa19.14■□□□□ 0.65
UPF3B-202ENST00000345865 ORAI2Q96SN7 254 aa19.14■□□□□ 0.65
UPF3B-202ENST00000345865 BABAM1Q9NWV8 329 aa19.14■□□□□ 0.65
UPF3B-202ENST00000345865 ZBTB7CA1YPR0 619 aa19.13■□□□□ 0.65
UPF3B-202ENST00000345865 HMMRO75330 724 aa19.13■□□□□ 0.65
UPF3B-202ENST00000345865 LRRC59Q96AG4 307 aaKnown RBP19.13■□□□□ 0.65
UPF3B-202ENST00000345865 BRPF3Q9ULD4 1205 aa19.13■□□□□ 0.65
UPF3B-202ENST00000345865 XPCQ01831 940 aaPredicted RBP19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms