RNA–Protein interactions for RNA: ENST00000345617.7

HDAC4-201, Transcript of histone deacetylase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC4, Length 8,976 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-201ENST00000345617 HNRNPMP52272 730 aaKnown RBP eCLIP22.61■■□□□ 1.211e-6■■■■□ 22.9
HDAC4-201ENST00000345617 TMEM132AQ24JP5 1023 aa22.61■■□□□ 1.21
HDAC4-201ENST00000345617 PHAXQ9H814 394 aaKnown RBP22.61■■□□□ 1.21
HDAC4-201ENST00000345617 CCDC69A6NI79 296 aa22.61■■□□□ 1.21
HDAC4-201ENST00000345617 ALS2CR12Q96Q35 445 aa22.61■■□□□ 1.21
HDAC4-201ENST00000345617 EIF5P55010 431 aaKnown RBP22.61■■□□□ 1.21
HDAC4-201ENST00000345617 LRRC9Q6ZRR7 1453 aa22.61■■□□□ 1.21
HDAC4-201ENST00000345617 IFFO1Q0D2I5 559 aa22.61■■□□□ 1.21
HDAC4-201ENST00000345617 ANO10Q9NW15 660 aa22.61■■□□□ 1.21
HDAC4-201ENST00000345617 HMGB1P1B2RPK0 211 aaPredicted RBP22.6■■□□□ 1.21
HDAC4-201ENST00000345617 TUBB4AP04350 444 aa22.6■■□□□ 1.21
HDAC4-201ENST00000345617 CCDC158Q5M9N0 1113 aa22.59■■□□□ 1.21
HDAC4-201ENST00000345617 SYCE3A1L190 88 aa22.59■■□□□ 1.21
HDAC4-201ENST00000345617 ANKS4BQ8N8V4 417 aa22.59■■□□□ 1.21
HDAC4-201ENST00000345617 SH2B1Q9NRF2 756 aaPredicted RBP22.58■■□□□ 1.2
HDAC4-201ENST00000345617 CEBPZQ03701 1054 aaKnown RBP22.57■■□□□ 1.2
HDAC4-201ENST00000345617 FKBP15Q5T1M5 1219 aa22.57■■□□□ 1.2
HDAC4-201ENST00000345617 IKQ13123 557 aaPredicted RBP22.57■■□□□ 1.2
HDAC4-201ENST00000345617 WDR63Q8IWG1 891 aa22.57■■□□□ 1.2
HDAC4-201ENST00000345617 SURF6O75683 361 aaKnown RBP22.57■■□□□ 1.2
HDAC4-201ENST00000345617 BLOC1S2Q6QNY1 142 aa22.57■■□□□ 1.2
HDAC4-201ENST00000345617 NBPF1Q3BBV0 1214 aa22.57■■□□□ 1.2
HDAC4-201ENST00000345617 PDZRN3Q9UPQ7 1066 aa22.57■■□□□ 1.2
HDAC4-201ENST00000345617 KIF6Q6ZMV9 814 aa22.57■■□□□ 1.2
HDAC4-201ENST00000345617 USO1O60763 962 aaKnown RBP22.56■■□□□ 1.2
HDAC4-201ENST00000345617 CHD1LQ86WJ1 897 aa22.55■■□□□ 1.2
HDAC4-201ENST00000345617 KRT222Q8N1A0 295 aa22.55■■□□□ 1.2
HDAC4-201ENST00000345617 MVPQ14764 893 aaKnown RBP22.55■■□□□ 1.2
HDAC4-201ENST00000345617 HMGB2P26583 209 aaKnown RBP22.55■■□□□ 1.2
HDAC4-201ENST00000345617 SMARCC1Q92922 1105 aaPredicted RBP22.55■■□□□ 1.2
HDAC4-201ENST00000345617 BMS1Q14692 1282 aaKnown RBP22.55■■□□□ 1.2
HDAC4-201ENST00000345617 NKTRP30414 1462 aaKnown RBP22.54■■□□□ 1.2
HDAC4-201ENST00000345617 HSPA4P34932 840 aa22.54■■□□□ 1.2
HDAC4-201ENST00000345617 PAFAH1B1P43034 410 aa22.54■■□□□ 1.2
HDAC4-201ENST00000345617 CLIP2Q9UDT6 1046 aa22.54■■□□□ 1.2
HDAC4-201ENST00000345617 PYM1Q9BRP8 204 aaKnown RBP22.54■■□□□ 1.2
HDAC4-201ENST00000345617 HOOK3Q86VS8 718 aa22.53■■□□□ 1.2
HDAC4-201ENST00000345617 MNAT1P51948 309 aa22.53■■□□□ 1.2
HDAC4-201ENST00000345617 SREK1Q8WXA9 508 aaKnown RBP22.53■■□□□ 1.2
HDAC4-201ENST00000345617 HFM1A2PYH4 1435 aa22.53■■□□□ 1.2
HDAC4-201ENST00000345617 PDRG1Q9NUG6 133 aa22.53■■□□□ 1.2
HDAC4-201ENST00000345617 CCDC171Q6TFL3 1326 aa22.52■■□□□ 1.2
HDAC4-201ENST00000345617 TOP1P11387 765 aaKnown RBP22.52■■□□□ 1.2
HDAC4-201ENST00000345617 CEP112Q8N8E3 955 aa22.52■■□□□ 1.2
HDAC4-201ENST00000345617 ANAPC15P60006 121 aa22.52■■□□□ 1.2
HDAC4-201ENST00000345617 DNAAF4Q8WXU2 420 aa22.52■■□□□ 1.2
HDAC4-201ENST00000345617 NSRP1Q9H0G5 558 aaKnown RBP22.52■■□□□ 1.2
HDAC4-201ENST00000345617 MEX3CQ5U5Q3 659 aaKnown RBP22.52■■□□□ 1.19
HDAC4-201ENST00000345617 RAPGEF4Q8WZA2 1011 aa22.52■■□□□ 1.19
HDAC4-201ENST00000345617 HMGB1P09429 215 aaKnown RBP22.51■■□□□ 1.19
HDAC4-201ENST00000345617 CCDC150Q8NCX0 1101 aa22.51■■□□□ 1.19
HDAC4-201ENST00000345617 TTC39AQ5SRH9 613 aa22.51■■□□□ 1.19
HDAC4-201ENST00000345617 SEPT11Q9NVA2 429 aaKnown RBP22.51■■□□□ 1.19
HDAC4-201ENST00000345617 STMN4Q9H169 189 aaPredicted RBP22.51■■□□□ 1.19
HDAC4-201ENST00000345617 PSME1Q06323 249 aa22.5■■□□□ 1.19
HDAC4-201ENST00000345617 ATF7IPQ6VMQ6 1270 aa22.5■■□□□ 1.19
HDAC4-201ENST00000345617 STX1AQ16623 288 aa22.5■■□□□ 1.19
HDAC4-201ENST00000345617 SOGA3Q5TF21 947 aa22.5■■□□□ 1.19
HDAC4-201ENST00000345617 NECTIN2Q92692 538 aa22.5■■□□□ 1.19
HDAC4-201ENST00000345617 MINK1Q8N4C8 1332 aaPredicted RBP22.5■■□□□ 1.19
HDAC4-201ENST00000345617 CBX1P83916 185 aa22.5■■□□□ 1.19
HDAC4-201ENST00000345617 PPP4R3BQ5MIZ7 849 aa22.5■■□□□ 1.19
HDAC4-201ENST00000345617 U3KPZ7 1027 aaPredicted RBP22.5■■□□□ 1.19
HDAC4-201ENST00000345617 ZNF287Q9HBT7 754 aa22.5■■□□□ 1.19
HDAC4-201ENST00000345617 KIF20AO95235 890 aa22.49■■□□□ 1.19
HDAC4-201ENST00000345617 TICAM2Q86XR7 235 aa22.49■■□□□ 1.19
HDAC4-201ENST00000345617 CCDC196A0A1B0GTZ2 297 aa22.49■■□□□ 1.19
HDAC4-201ENST00000345617 TSG101Q99816 390 aa22.49■■□□□ 1.19
HDAC4-201ENST00000345617 GTF2A1P52655 376 aaPredicted RBP22.49■■□□□ 1.19
HDAC4-201ENST00000345617 ARHGAP5Q13017 1502 aa22.49■■□□□ 1.19
HDAC4-201ENST00000345617 GSTTP1A0A1W2PQM5 241 aa22.49■■□□□ 1.19
HDAC4-201ENST00000345617 TUBBP07437 444 aa22.49■■□□□ 1.19
HDAC4-201ENST00000345617 GTPBP4Q9BZE4 634 aaKnown RBP22.48■■□□□ 1.19
HDAC4-201ENST00000345617 YEATS4O95619 227 aa22.48■■□□□ 1.19
HDAC4-201ENST00000345617 RAB34Q9BZG1 259 aa22.48■■□□□ 1.19
HDAC4-201ENST00000345617 RNF187Q5TA31 235 aaPredicted RBP22.48■■□□□ 1.19
HDAC4-201ENST00000345617 DDX46Q7L014 1031 aaKnown RBP22.47■■□□□ 1.19
HDAC4-201ENST00000345617 SETSIPP0DME0 302 aa22.47■■□□□ 1.19
HDAC4-201ENST00000345617 SEPT6Q14141 434 aa22.47■■□□□ 1.19
HDAC4-201ENST00000345617 DAPK1P53355 1430 aa22.47■■□□□ 1.19
HDAC4-201ENST00000345617 ANKRD50Q9ULJ7 1429 aa22.47■■□□□ 1.19
HDAC4-201ENST00000345617 GPATCH11Q8N954 259 aa22.47■■□□□ 1.19
HDAC4-201ENST00000345617 SRRTQ9BXP5 876 aaKnown RBP22.47■■□□□ 1.19
HDAC4-201ENST00000345617 ATP2B1P20020 1258 aa22.47■■□□□ 1.19
HDAC4-201ENST00000345617 KIF4BQ2VIQ3 1234 aa22.47■■□□□ 1.19
HDAC4-201ENST00000345617 PNISRQ8TF01 805 aaKnown RBP22.47■■□□□ 1.19
HDAC4-201ENST00000345617 FYB1O15117 783 aa22.46■■□□□ 1.19
HDAC4-201ENST00000345617 FAM114A1Q8IWE2 563 aa22.46■■□□□ 1.19
HDAC4-201ENST00000345617 CASTP20810 708 aaKnown RBP22.46■■□□□ 1.19
HDAC4-201ENST00000345617 UBAC1Q9BSL1 405 aa22.46■■□□□ 1.19
HDAC4-201ENST00000345617 CKAP4Q07065 602 aaKnown RBP22.46■■□□□ 1.19
HDAC4-201ENST00000345617 UVSSAQ2YD98 709 aa22.46■■□□□ 1.19
HDAC4-201ENST00000345617 NOB1Q9ULX3 412 aaKnown RBP22.46■■□□□ 1.19
HDAC4-201ENST00000345617 CASKIN1Q8WXD9 1431 aa22.46■■□□□ 1.19
HDAC4-201ENST00000345617 TNNT1P13805 278 aa22.46■■□□□ 1.19
HDAC4-201ENST00000345617 DAAM2Q86T65 1068 aa22.46■■□□□ 1.19
HDAC4-201ENST00000345617 DDX19AQ9NUU7 478 aaKnown RBP22.46■■□□□ 1.19
HDAC4-201ENST00000345617 IFI16Q16666 785 aaKnown RBP22.46■■□□□ 1.19
HDAC4-201ENST00000345617 TWISTNBQ3B726 338 aaPredicted RBP22.46■■□□□ 1.19
HDAC4-201ENST00000345617 PLVAPQ9BX97 442 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms