RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 RIMS1Q86UR5 1692 aaKnown RBP18.64■□□□□ 0.57
VIPAS39-202ENST00000343765 TSPYL4Q9UJ04 414 aa18.64■□□□□ 0.57
VIPAS39-202ENST00000343765 SBNO1A3KN83 1393 aa18.64■□□□□ 0.57
VIPAS39-202ENST00000343765 ARHGEF10O15013 1369 aa18.64■□□□□ 0.57
VIPAS39-202ENST00000343765 LTV1Q96GA3 475 aaPredicted RBP18.63■□□□□ 0.57
VIPAS39-202ENST00000343765 ANTXR1Q9H6X2 564 aa18.63■□□□□ 0.57
VIPAS39-202ENST00000343765 BMP2KLQ5H9B9 411 aa18.63■□□□□ 0.57
VIPAS39-202ENST00000343765 FER1L4A9Z1Z3 1794 aa18.62■□□□□ 0.57
VIPAS39-202ENST00000343765 SLC4A2P04920 1241 aa18.62■□□□□ 0.57
VIPAS39-202ENST00000343765 CRB1P82279 1406 aa18.62■□□□□ 0.57
VIPAS39-202ENST00000343765 APBB1O00213 710 aa18.61■□□□□ 0.57
VIPAS39-202ENST00000343765 RGPD1P0DJD0 1748 aa18.61■□□□□ 0.57
VIPAS39-202ENST00000343765 HAP1P54257 671 aaPredicted RBP18.61■□□□□ 0.57
VIPAS39-202ENST00000343765 INTS3Q68E01 1043 aaKnown RBP18.61■□□□□ 0.57
VIPAS39-202ENST00000343765 MSH6P52701 1360 aa18.61■□□□□ 0.57
VIPAS39-202ENST00000343765 CEP170BQ9Y4F5 1589 aaPredicted RBP18.6■□□□□ 0.57
VIPAS39-202ENST00000343765 RGS12O14924 1447 aa18.6■□□□□ 0.57
VIPAS39-202ENST00000343765 ABTB2Q8N961 1025 aa18.6■□□□□ 0.57
VIPAS39-202ENST00000343765 KIAA0232Q92628 1395 aa18.6■□□□□ 0.57
VIPAS39-202ENST00000343765 SLC4A10Q6U841 1118 aa18.59■□□□□ 0.57
VIPAS39-202ENST00000343765 MEIS3Q99687 375 aa18.59■□□□□ 0.57
VIPAS39-202ENST00000343765 IGSF1Q8N6C5 1336 aa18.58■□□□□ 0.57
VIPAS39-202ENST00000343765 PIK3C2AO00443 1686 aa18.58■□□□□ 0.57
VIPAS39-202ENST00000343765 F6X3S4 739 aa18.58■□□□□ 0.56
VIPAS39-202ENST00000343765 TBC1D9Q6ZT07 1266 aa18.58■□□□□ 0.56
VIPAS39-202ENST00000343765 G2E3Q7L622 706 aa18.58■□□□□ 0.56
VIPAS39-202ENST00000343765 HSCBQ8IWL3 235 aa18.58■□□□□ 0.56
VIPAS39-202ENST00000343765 NECTIN2Q92692 538 aa18.58■□□□□ 0.56
VIPAS39-202ENST00000343765 C16orf71Q8IYS4 520 aaPredicted RBP18.58■□□□□ 0.56
VIPAS39-202ENST00000343765 HOXC9P31274 260 aa18.57■□□□□ 0.56
VIPAS39-202ENST00000343765 GAS2L2Q8NHY3 880 aa18.57■□□□□ 0.56
VIPAS39-202ENST00000343765 FMN2Q9NZ56 1722 aa18.57■□□□□ 0.56
VIPAS39-202ENST00000343765 USHBP1Q8N6Y0 703 aa18.56■□□□□ 0.56
VIPAS39-202ENST00000343765 PTPRCP08575 1304 aa18.56■□□□□ 0.56
VIPAS39-202ENST00000343765 KDRP35968 1356 aa18.56■□□□□ 0.56
VIPAS39-202ENST00000343765 KIF24Q5T7B8 1368 aa18.56■□□□□ 0.56
VIPAS39-202ENST00000343765 CEP85Q6P2H3 762 aa18.56■□□□□ 0.56
VIPAS39-202ENST00000343765 ANKRD44Q8N8A2 993 aa18.56■□□□□ 0.56
VIPAS39-202ENST00000343765 DCTPP1Q9H773 170 aa18.56■□□□□ 0.56
VIPAS39-202ENST00000343765 ZBTB7CA1YPR0 619 aa18.55■□□□□ 0.56
VIPAS39-202ENST00000343765 ATP10DQ9P241 1426 aa18.55■□□□□ 0.56
VIPAS39-202ENST00000343765 SMARCA5O60264 1052 aaPredicted RBP18.55■□□□□ 0.56
VIPAS39-202ENST00000343765 GSPT1P15170 499 aaKnown RBP18.55■□□□□ 0.56
VIPAS39-202ENST00000343765 RBM25P49756 843 aaKnown RBP18.55■□□□□ 0.56
VIPAS39-202ENST00000343765 OTUD7AQ8TE49 926 aaPredicted RBP18.55■□□□□ 0.56
VIPAS39-202ENST00000343765 PLEKHM2Q8IWE5 1019 aa18.54■□□□□ 0.56
VIPAS39-202ENST00000343765 IL27Q8NEV9 243 aa18.54■□□□□ 0.56
VIPAS39-202ENST00000343765 RTL1A6NKG5 1358 aa18.54■□□□□ 0.56
VIPAS39-202ENST00000343765 XRN1Q8IZH2 1706 aaKnown RBP18.54■□□□□ 0.56
VIPAS39-202ENST00000343765 GNAT3A8MTJ3 354 aa18.52■□□□□ 0.56
VIPAS39-202ENST00000343765 ANKARQ7Z5J8 1434 aa18.52■□□□□ 0.56
VIPAS39-202ENST00000343765 RPAP2Q8IXW5 612 aaPredicted RBP18.52■□□□□ 0.55
VIPAS39-202ENST00000343765 CDC45O75419 566 aa18.51■□□□□ 0.55
VIPAS39-202ENST00000343765 STK31Q9BXU1 1019 aa18.51■□□□□ 0.55
VIPAS39-202ENST00000343765 BRPF3Q9ULD4 1205 aa18.51■□□□□ 0.55
VIPAS39-202ENST00000343765 PHF8Q9UPP1 1060 aa18.51■□□□□ 0.55
VIPAS39-202ENST00000343765 RBM42Q9BTD8 480 aaKnown RBP18.5■□□□□ 0.55
VIPAS39-202ENST00000343765 CHMP5Q9NZZ3 219 aa18.5■□□□□ 0.55
VIPAS39-202ENST00000343765 HSP90AB1P08238 724 aaKnown RBP18.49■□□□□ 0.55
VIPAS39-202ENST00000343765 FKBP5Q13451 457 aaPredicted RBP18.49■□□□□ 0.55
VIPAS39-202ENST00000343765 TTC22Q5TAA0 569 aa18.49■□□□□ 0.55
VIPAS39-202ENST00000343765 KIF2CQ99661 725 aa18.49■□□□□ 0.55
VIPAS39-202ENST00000343765 RTN4Q9NQC3 1192 aaKnown RBP18.49■□□□□ 0.55
VIPAS39-202ENST00000343765 FOXD4L1Q9NU39 408 aa18.49■□□□□ 0.55
VIPAS39-202ENST00000343765 IL17REQ8NFR9 667 aa18.48■□□□□ 0.55
VIPAS39-202ENST00000343765 CD2BP2O95400 341 aaKnown RBP18.47■□□□□ 0.55
VIPAS39-202ENST00000343765 ESCO1Q5FWF5 840 aa18.47■□□□□ 0.55
VIPAS39-202ENST00000343765 ANKLE2Q86XL3 938 aa18.47■□□□□ 0.55
VIPAS39-202ENST00000343765 MAP3K5Q99683 1374 aa18.47■□□□□ 0.55
VIPAS39-202ENST00000343765 CCT4P50991 539 aaKnown RBP18.47■□□□□ 0.55
VIPAS39-202ENST00000343765 FLIIQ13045 1269 aa18.47■□□□□ 0.55
VIPAS39-202ENST00000343765 XPCQ01831 940 aaPredicted RBP18.46■□□□□ 0.55
VIPAS39-202ENST00000343765 CCDC30Q5VVM6 783 aa18.46■□□□□ 0.55
VIPAS39-202ENST00000343765 HSP90AA1P07900 732 aaKnown RBP18.45■□□□□ 0.54
VIPAS39-202ENST00000343765 PSME1Q06323 249 aa18.45■□□□□ 0.54
VIPAS39-202ENST00000343765 SNX21Q969T3 373 aa18.45■□□□□ 0.54
VIPAS39-202ENST00000343765 NWD1Q149M9 1564 aa18.45■□□□□ 0.54
VIPAS39-202ENST00000343765 HTATSF1O43719 755 aaKnown RBP18.45■□□□□ 0.54
VIPAS39-202ENST00000343765 MCM4P33991 863 aa18.45■□□□□ 0.54
VIPAS39-202ENST00000343765 ARXQ96QS3 562 aa18.45■□□□□ 0.54
VIPAS39-202ENST00000343765 HMMRO75330 724 aa18.44■□□□□ 0.54
VIPAS39-202ENST00000343765 EXOC6BQ9Y2D4 811 aa18.44■□□□□ 0.54
VIPAS39-202ENST00000343765 MARF1Q9Y4F3 1742 aaKnown RBP18.44■□□□□ 0.54
VIPAS39-202ENST00000343765 SDSP20132 328 aa18.44■□□□□ 0.54
VIPAS39-202ENST00000343765 GNAI2P04899 355 aa18.43■□□□□ 0.54
VIPAS39-202ENST00000343765 TAF7Q15545 349 aaPredicted RBP18.43■□□□□ 0.54
VIPAS39-202ENST00000343765 GZF1Q9H116 711 aaPredicted RBP18.43■□□□□ 0.54
VIPAS39-202ENST00000343765 SETD1BQ9UPS6 1966 aaKnown RBP18.43■□□□□ 0.54
VIPAS39-202ENST00000343765 NBPF6Q5VWK0 638 aa18.42■□□□□ 0.54
VIPAS39-202ENST00000343765 NBPF4Q96M43 638 aa18.42■□□□□ 0.54
VIPAS39-202ENST00000343765 TSHZ3Q63HK5 1081 aa18.42■□□□□ 0.54
VIPAS39-202ENST00000343765 LMOD2Q6P5Q4 547 aa18.42■□□□□ 0.54
VIPAS39-202ENST00000343765 LRRC59Q96AG4 307 aaKnown RBP18.41■□□□□ 0.54
VIPAS39-202ENST00000343765 EIF2S2P20042 333 aaKnown RBP18.41■□□□□ 0.54
VIPAS39-202ENST00000343765 HDGFL1Q5TGJ6 251 aa18.41■□□□□ 0.54
VIPAS39-202ENST00000343765 IP6K1Q92551 441 aa18.41■□□□□ 0.54
VIPAS39-202ENST00000343765 LGR6Q9HBX8 967 aa18.4■□□□□ 0.54
VIPAS39-202ENST00000343765 NCOA3Q9Y6Q9 1424 aa18.4■□□□□ 0.54
VIPAS39-202ENST00000343765 PNMA6EA0A0J9YXQ4 647 aa18.39■□□□□ 0.53
VIPAS39-202ENST00000343765 K7ELQ4 463 aaPredicted RBP18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms