RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 PHF14O94880 888 aa12.4□□□□□ -0.42
USP54-201ENST00000339859 HSP90AB2PQ58FF8 381 aa12.4□□□□□ -0.42
USP54-201ENST00000339859 MIS18AQ9NYP9 233 aa12.4□□□□□ -0.42
USP54-201ENST00000339859 PRDM15P57071 1507 aaPredicted RBP12.4□□□□□ -0.42
USP54-201ENST00000339859 MAP3K4Q9Y6R4 1608 aa12.4□□□□□ -0.42
USP54-201ENST00000339859 PTPRTO14522 1441 aa12.4□□□□□ -0.42
USP54-201ENST00000339859 ST18O60284 1047 aa12.4□□□□□ -0.43
USP54-201ENST00000339859 WASHC4Q2M389 1173 aa12.4□□□□□ -0.43
USP54-201ENST00000339859 PANK1Q8TE04 598 aa12.39□□□□□ -0.43
USP54-201ENST00000339859 ZNF772Q68DY9 489 aaPredicted RBP12.39□□□□□ -0.43
USP54-201ENST00000339859 KDM5AP29375 1690 aaKnown RBP12.39□□□□□ -0.43
USP54-201ENST00000339859 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.39□□□□□ -0.43
USP54-201ENST00000339859 UNC13BO14795 1591 aa12.39□□□□□ -0.43
USP54-201ENST00000339859 SBNO1A3KN83 1393 aa12.39□□□□□ -0.43
USP54-201ENST00000339859 ADGRB3O60242 1522 aa12.39□□□□□ -0.43
USP54-201ENST00000339859 DBF4Q9UBU7 674 aaPredicted RBP12.39□□□□□ -0.43
USP54-201ENST00000339859 DIP2CQ9Y2E4 1556 aa12.39□□□□□ -0.43
USP54-201ENST00000339859 SLC3A2P08195 630 aaKnown RBP12.39□□□□□ -0.43
USP54-201ENST00000339859 ZKSCAN1P17029 563 aaPredicted RBP12.39□□□□□ -0.43
USP54-201ENST00000339859 POLD1P28340 1107 aa12.39□□□□□ -0.43
USP54-201ENST00000339859 DCTN1Q14203 1278 aa12.39□□□□□ -0.43
USP54-201ENST00000339859 EIF4A2Q14240 407 aaKnown RBP12.39□□□□□ -0.43
USP54-201ENST00000339859 CNTROBQ8N137 903 aa12.39□□□□□ -0.43
USP54-201ENST00000339859 CAMSAP1Q5T5Y3 1602 aa12.38□□□□□ -0.43
USP54-201ENST00000339859 REC8O95072 547 aa12.38□□□□□ -0.43
USP54-201ENST00000339859 PPP1R42Q7Z4L9 355 aa12.38□□□□□ -0.43
USP54-201ENST00000339859 MYD88Q99836 296 aa12.38□□□□□ -0.43
USP54-201ENST00000339859 PLEKHG3A1L390 1219 aa12.38□□□□□ -0.43
USP54-201ENST00000339859 HIP1O00291 1037 aa12.38□□□□□ -0.43
USP54-201ENST00000339859 VPS53Q5VIR6 699 aa12.38□□□□□ -0.43
USP54-201ENST00000339859 MARCH6O60337 910 aa12.37□□□□□ -0.43
USP54-201ENST00000339859 PDE3AQ14432 1141 aa12.37□□□□□ -0.43
USP54-201ENST00000339859 CLSTN1O94985 981 aa12.37□□□□□ -0.43
USP54-201ENST00000339859 ALDH1L2Q3SY69 923 aa12.37□□□□□ -0.43
USP54-201ENST00000339859 METP08581 1390 aa12.37□□□□□ -0.43
USP54-201ENST00000339859 ZNF335Q9H4Z2 1342 aaPredicted RBP12.37□□□□□ -0.43
USP54-201ENST00000339859 SYNMO15061 1565 aa12.37□□□□□ -0.43
USP54-201ENST00000339859 CDCA7LQ96GN5 454 aa12.37□□□□□ -0.43
USP54-201ENST00000339859 CCDC34Q96HJ3 373 aa12.37□□□□□ -0.43
USP54-201ENST00000339859 ZRANB1Q9UGI0 708 aa12.37□□□□□ -0.43
USP54-201ENST00000339859 ZC3H13Q5T200 1668 aaKnown RBP12.37□□□□□ -0.43
USP54-201ENST00000339859 CPLX2Q6PUV4 134 aaKnown RBP12.36□□□□□ -0.43
USP54-201ENST00000339859 DCAF5Q96JK2 942 aa12.36□□□□□ -0.43
USP54-201ENST00000339859 TRMT112Q9UI30 125 aaKnown RBP12.36□□□□□ -0.43
USP54-201ENST00000339859 ZSCAN25Q6NSZ9 544 aa12.36□□□□□ -0.43
USP54-201ENST00000339859 GOLGA6L6A8MZA4 724 aa12.36□□□□□ -0.43
USP54-201ENST00000339859 ATF7IPQ6VMQ6 1270 aa12.36□□□□□ -0.43
USP54-201ENST00000339859 CEP152O94986 1710 aa12.36□□□□□ -0.43
USP54-201ENST00000339859 SPHKAPQ2M3C7 1700 aa12.36□□□□□ -0.43
USP54-201ENST00000339859 STK32BQ9NY57 414 aa12.36□□□□□ -0.43
USP54-201ENST00000339859 FAM135BQ49AJ0 1406 aa12.36□□□□□ -0.43
USP54-201ENST00000339859 GCC1Q96CN9 775 aa12.35□□□□□ -0.43
USP54-201ENST00000339859 THUMPD2Q9BTF0 503 aaKnown RBP12.35□□□□□ -0.43
USP54-201ENST00000339859 ANO2Q9NQ90 1003 aa12.35□□□□□ -0.43
USP54-201ENST00000339859 POLKQ9UBT6 870 aa12.35□□□□□ -0.43
USP54-201ENST00000339859 AGLP35573 1532 aa12.35□□□□□ -0.43
USP54-201ENST00000339859 DNAJC2Q99543 621 aaKnown RBP12.35□□□□□ -0.43
USP54-201ENST00000339859 RBM5P52756 815 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP54-201ENST00000339859 INTS3Q68E01 1043 aaKnown RBP12.35□□□□□ -0.43
USP54-201ENST00000339859 TESK2Q96S53 571 aa12.35□□□□□ -0.43
USP54-201ENST00000339859 FSD1Q9BTV5 496 aa12.35□□□□□ -0.43
USP54-201ENST00000339859 IL16Q14005 1332 aa12.35□□□□□ -0.43
USP54-201ENST00000339859 MAP3K5Q99683 1374 aa12.35□□□□□ -0.43
USP54-201ENST00000339859 PLEKHH1Q9ULM0 1364 aa12.35□□□□□ -0.43
USP54-201ENST00000339859 DDX17Q92841 729 aaKnown RBP12.35□□□□□ -0.43
USP54-201ENST00000339859 SLFN5Q08AF3 891 aa12.34□□□□□ -0.43
USP54-201ENST00000339859 PTMSP20962 102 aa12.34□□□□□ -0.43
USP54-201ENST00000339859 TRPC5Q9UL62 973 aaPredicted RBP12.34□□□□□ -0.43
USP54-201ENST00000339859 INO80Q9ULG1 1556 aaPredicted RBP12.34□□□□□ -0.43
USP54-201ENST00000339859 DHX16O60231 1041 aaKnown RBP12.34□□□□□ -0.43
USP54-201ENST00000339859 CEP126Q9P2H0 1117 aa12.34□□□□□ -0.43
USP54-201ENST00000339859 RIMS1Q86UR5 1692 aaKnown RBP12.34□□□□□ -0.43
USP54-201ENST00000339859 CSPP1Q1MSJ5 1256 aa12.34□□□□□ -0.43
USP54-201ENST00000339859 TCEAL9Q9UHQ7 104 aa12.34□□□□□ -0.43
USP54-201ENST00000339859 AKAP2Q9Y2D5 859 aa12.34□□□□□ -0.43
USP54-201ENST00000339859 FAM98CQ17RN3 349 aaKnown RBP12.33□□□□□ -0.43
USP54-201ENST00000339859 NFXL1Q6ZNB6 911 aa12.33□□□□□ -0.43
USP54-201ENST00000339859 NBR1Q14596 966 aa12.33□□□□□ -0.44
USP54-201ENST00000339859 RTCBQ9Y3I0 505 aaKnown RBP12.33□□□□□ -0.44
USP54-201ENST00000339859 PTPRCP08575 1304 aa12.33□□□□□ -0.44
USP54-201ENST00000339859 TFCP2L1Q9NZI6 479 aa12.33□□□□□ -0.44
USP54-201ENST00000339859 ANKIB1Q9P2G1 1089 aa12.33□□□□□ -0.44
USP54-201ENST00000339859 MAP3K19Q56UN5 1328 aa12.33□□□□□ -0.44
USP54-201ENST00000339859 ABCA6Q8N139 1617 aa12.33□□□□□ -0.44
USP54-201ENST00000339859 SIL1Q9H173 461 aa12.33□□□□□ -0.44
USP54-201ENST00000339859 POLR3AO14802 1390 aaPredicted RBP12.33□□□□□ -0.44
USP54-201ENST00000339859 CAVIN4Q5BKX8 364 aa12.32□□□□□ -0.44
USP54-201ENST00000339859 AMER1Q5JTC6 1135 aaPredicted RBP12.32□□□□□ -0.44
USP54-201ENST00000339859 LRRCC1Q9C099 1032 aa12.32□□□□□ -0.44
USP54-201ENST00000339859 DNAAF4Q8WXU2 420 aa12.32□□□□□ -0.44
USP54-201ENST00000339859 NYXQ9GZU5 481 aa12.32□□□□□ -0.44
USP54-201ENST00000339859 TMOD2Q9NZR1 351 aa12.32□□□□□ -0.44
USP54-201ENST00000339859 PARP3Q9Y6F1 533 aa12.32□□□□□ -0.44
USP54-201ENST00000339859 ANKRD18BA2A2Z9 1011 aa12.32□□□□□ -0.44
USP54-201ENST00000339859 RASSF8Q8NHQ8 419 aa12.32□□□□□ -0.44
USP54-201ENST00000339859 BAG6P46379 1132 aa12.32□□□□□ -0.44
USP54-201ENST00000339859 DDX46Q7L014 1031 aaKnown RBP12.32□□□□□ -0.44
USP54-201ENST00000339859 RALYLQ86SE5 291 aaKnown RBP12.32□□□□□ -0.44
USP54-201ENST00000339859 FAM184AQ8NB25 1140 aa12.32□□□□□ -0.44
USP54-201ENST00000339859 SETDB2Q96T68 719 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms