RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 ANKRD45Q5TZF3 282 aa18.7■□□□□ 0.58
CLCNKA-201ENST00000331433 ABTB2Q8N961 1025 aa18.7■□□□□ 0.58
CLCNKA-201ENST00000331433 MFAP1P55081 439 aaKnown RBP18.69■□□□□ 0.58
CLCNKA-201ENST00000331433 KIAA0232Q92628 1395 aa18.69■□□□□ 0.58
CLCNKA-201ENST00000331433 RTF1Q92541 710 aaKnown RBP18.69■□□□□ 0.58
CLCNKA-201ENST00000331433 C14orf37Q86TY3 774 aa18.68■□□□□ 0.58
CLCNKA-201ENST00000331433 MARF1Q9Y4F3 1742 aaKnown RBP18.68■□□□□ 0.58
CLCNKA-201ENST00000331433 HOXC9P31274 260 aa18.68■□□□□ 0.58
CLCNKA-201ENST00000331433 ANKLE2Q86XL3 938 aa18.68■□□□□ 0.58
CLCNKA-201ENST00000331433 GCC1Q96CN9 775 aa18.68■□□□□ 0.58
CLCNKA-201ENST00000331433 RGS12O14924 1447 aa18.68■□□□□ 0.58
CLCNKA-201ENST00000331433 BECN1Q14457 450 aa18.67■□□□□ 0.58
CLCNKA-201ENST00000331433 HAP1P54257 671 aaPredicted RBP18.67■□□□□ 0.58
CLCNKA-201ENST00000331433 LTV1Q96GA3 475 aaPredicted RBP18.67■□□□□ 0.58
CLCNKA-201ENST00000331433 TSPYL4Q9UJ04 414 aa18.66■□□□□ 0.58
CLCNKA-201ENST00000331433 INTS3Q68E01 1043 aaKnown RBP18.65■□□□□ 0.58
CLCNKA-201ENST00000331433 GAS2L2Q8NHY3 880 aa18.65■□□□□ 0.58
CLCNKA-201ENST00000331433 PHF8Q9UPP1 1060 aa18.65■□□□□ 0.58
CLCNKA-201ENST00000331433 CHD2O14647 1828 aaKnown RBP18.65■□□□□ 0.58
CLCNKA-201ENST00000331433 C22orf23Q9BZE7 217 aa18.65■□□□□ 0.58
CLCNKA-201ENST00000331433 SLC4A2P04920 1241 aa18.64■□□□□ 0.57
CLCNKA-201ENST00000331433 KIF24Q5T7B8 1368 aa18.63■□□□□ 0.57
CLCNKA-201ENST00000331433 SLKQ9H2G2 1235 aaPredicted RBP18.63■□□□□ 0.57
CLCNKA-201ENST00000331433 TBC1D2Q9BYX2 928 aa18.63■□□□□ 0.57
CLCNKA-201ENST00000331433 MSH6P52701 1360 aa18.63■□□□□ 0.57
CLCNKA-201ENST00000331433 NWD1Q149M9 1564 aa18.62■□□□□ 0.57
CLCNKA-201ENST00000331433 PTPRCP08575 1304 aa18.61■□□□□ 0.57
CLCNKA-201ENST00000331433 FRAT2O75474 233 aaPredicted RBP18.61■□□□□ 0.57
CLCNKA-201ENST00000331433 BMP2KLQ5H9B9 411 aa18.61■□□□□ 0.57
CLCNKA-201ENST00000331433 USHBP1Q8N6Y0 703 aa18.61■□□□□ 0.57
CLCNKA-201ENST00000331433 BCL11AQ9H165 835 aa18.61■□□□□ 0.57
CLCNKA-201ENST00000331433 USP54Q70EL1 1684 aa18.6■□□□□ 0.57
CLCNKA-201ENST00000331433 G2E3Q7L622 706 aa18.6■□□□□ 0.57
CLCNKA-201ENST00000331433 GNAT3A8MTJ3 354 aa18.6■□□□□ 0.57
CLCNKA-201ENST00000331433 ESCO1Q5FWF5 840 aa18.6■□□□□ 0.57
CLCNKA-201ENST00000331433 ZNF142P52746 1687 aaPredicted RBP18.59■□□□□ 0.57
CLCNKA-201ENST00000331433 ATP10DQ9P241 1426 aa18.59■□□□□ 0.57
CLCNKA-201ENST00000331433 MEIS3Q99687 375 aa18.59■□□□□ 0.57
CLCNKA-201ENST00000331433 F6X3S4 739 aa18.58■□□□□ 0.57
CLCNKA-201ENST00000331433 DCTPP1Q9H773 170 aa18.58■□□□□ 0.57
CLCNKA-201ENST00000331433 SETD1BQ9UPS6 1966 aaKnown RBP18.58■□□□□ 0.56
CLCNKA-201ENST00000331433 ANKRD44Q8N8A2 993 aa18.58■□□□□ 0.56
CLCNKA-201ENST00000331433 RTL1A6NKG5 1358 aa18.57■□□□□ 0.56
CLCNKA-201ENST00000331433 LTN1O94822 1766 aa18.57■□□□□ 0.56
CLCNKA-201ENST00000331433 HTATSF1O43719 755 aaKnown RBP18.57■□□□□ 0.56
CLCNKA-201ENST00000331433 PSME1Q06323 249 aa18.57■□□□□ 0.56
CLCNKA-201ENST00000331433 CEP85Q6P2H3 762 aa18.57■□□□□ 0.56
CLCNKA-201ENST00000331433 SLC4A10Q6U841 1118 aa18.57■□□□□ 0.56
CLCNKA-201ENST00000331433 IL17REQ8NFR9 667 aa18.57■□□□□ 0.56
CLCNKA-201ENST00000331433 ZBTB7CA1YPR0 619 aa18.57■□□□□ 0.56
CLCNKA-201ENST00000331433 ADGRL3Q9HAR2 1447 aa18.57■□□□□ 0.56
CLCNKA-201ENST00000331433 LRRC37A3O60309 1634 aa18.56■□□□□ 0.56
CLCNKA-201ENST00000331433 MAP3K5Q99683 1374 aa18.56■□□□□ 0.56
CLCNKA-201ENST00000331433 SPRYD3Q8NCJ5 442 aa18.56■□□□□ 0.56
CLCNKA-201ENST00000331433 NECTIN2Q92692 538 aa18.56■□□□□ 0.56
CLCNKA-201ENST00000331433 ANTXR1Q9H6X2 564 aa18.56■□□□□ 0.56
CLCNKA-201ENST00000331433 PLEKHG5O94827 1062 aa18.55■□□□□ 0.56
CLCNKA-201ENST00000331433 RPAP2Q8IXW5 612 aaPredicted RBP18.55■□□□□ 0.56
CLCNKA-201ENST00000331433 ADAMTSL3P82987 1691 aa18.54■□□□□ 0.56
CLCNKA-201ENST00000331433 IP6K1Q92551 441 aa18.54■□□□□ 0.56
CLCNKA-201ENST00000331433 NFAT5O94916 1531 aa18.54■□□□□ 0.56
CLCNKA-201ENST00000331433 XPCQ01831 940 aaPredicted RBP18.54■□□□□ 0.56
CLCNKA-201ENST00000331433 TBC1D9Q6ZT07 1266 aa18.54■□□□□ 0.56
CLCNKA-201ENST00000331433 PLEKHM2Q8IWE5 1019 aa18.54■□□□□ 0.56
CLCNKA-201ENST00000331433 C16orf71Q8IYS4 520 aaPredicted RBP18.54■□□□□ 0.56
CLCNKA-201ENST00000331433 STK31Q9BXU1 1019 aa18.54■□□□□ 0.56
CLCNKA-201ENST00000331433 APBB1O00213 710 aa18.53■□□□□ 0.56
CLCNKA-201ENST00000331433 NBPF6Q5VWK0 638 aa18.53■□□□□ 0.56
CLCNKA-201ENST00000331433 NBPF4Q96M43 638 aa18.53■□□□□ 0.56
CLCNKA-201ENST00000331433 GSPT1P15170 499 aaKnown RBP18.52■□□□□ 0.56
CLCNKA-201ENST00000331433 ORAI2Q96SN7 254 aa18.52■□□□□ 0.56
CLCNKA-201ENST00000331433 NPHP4O75161 1426 aaPredicted RBP18.52■□□□□ 0.56
CLCNKA-201ENST00000331433 RBM25P49756 843 aaKnown RBP18.52■□□□□ 0.56
CLCNKA-201ENST00000331433 OTUD7AQ8TE49 926 aaPredicted RBP18.51■□□□□ 0.55
CLCNKA-201ENST00000331433 FLIIQ13045 1269 aa18.51■□□□□ 0.55
CLCNKA-201ENST00000331433 TAF7Q15545 349 aaPredicted RBP18.51■□□□□ 0.55
CLCNKA-201ENST00000331433 SMARCA5O60264 1052 aaPredicted RBP18.5■□□□□ 0.55
CLCNKA-201ENST00000331433 CCT4P50991 539 aaKnown RBP18.5■□□□□ 0.55
CLCNKA-201ENST00000331433 CCDC30Q5VVM6 783 aa18.5■□□□□ 0.55
CLCNKA-201ENST00000331433 FKBP5Q13451 457 aaPredicted RBP18.5■□□□□ 0.55
CLCNKA-201ENST00000331433 FAM208AQ9UK61 1670 aaKnown RBP18.49■□□□□ 0.55
CLCNKA-201ENST00000331433 GSE1Q14687 1217 aa18.49■□□□□ 0.55
CLCNKA-201ENST00000331433 LRRC59Q96AG4 307 aaKnown RBP18.49■□□□□ 0.55
CLCNKA-201ENST00000331433 KCNH5Q8NCM2 988 aa18.48■□□□□ 0.55
CLCNKA-201ENST00000331433 LMOD2Q6P5Q4 547 aa18.48■□□□□ 0.55
CLCNKA-201ENST00000331433 RGPD2P0DJD1 1756 aa18.48■□□□□ 0.55
CLCNKA-201ENST00000331433 CDC45O75419 566 aa18.47■□□□□ 0.55
CLCNKA-201ENST00000331433 TTC22Q5TAA0 569 aa18.47■□□□□ 0.55
CLCNKA-201ENST00000331433 HSCBQ8IWL3 235 aa18.47■□□□□ 0.55
CLCNKA-201ENST00000331433 LGR6Q9HBX8 967 aa18.46■□□□□ 0.55
CLCNKA-201ENST00000331433 CEMIPQ8WUJ3 1361 aa18.45■□□□□ 0.54
CLCNKA-201ENST00000331433 GCP02774 474 aa18.45■□□□□ 0.54
CLCNKA-201ENST00000331433 KIF2CQ99661 725 aa18.45■□□□□ 0.54
CLCNKA-201ENST00000331433 BABAM1Q9NWV8 329 aa18.45■□□□□ 0.54
CLCNKA-201ENST00000331433 HMMRO75330 724 aa18.45■□□□□ 0.54
CLCNKA-201ENST00000331433 GNAI2P04899 355 aa18.44■□□□□ 0.54
CLCNKA-201ENST00000331433 HDGFL1Q5TGJ6 251 aa18.44■□□□□ 0.54
CLCNKA-201ENST00000331433 CACNA1FO60840 1977 aa18.43■□□□□ 0.54
CLCNKA-201ENST00000331433 PROSER2Q86WR7 435 aaPredicted RBP18.43■□□□□ 0.54
CLCNKA-201ENST00000331433 PHAXQ9H814 394 aaKnown RBP18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 296.9 ms