RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 AOX1Q06278 1338 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 CPSF1Q10570 1443 aaKnown RBP5.75□□□□□ -1.49
PTPN13-201ENST00000316707 CCDC192P0DO97 292 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 PDE1AP54750 535 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 CABP2Q9NPB3 220 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 RBM27Q9P2N5 1060 aaKnown RBP5.75□□□□□ -1.49
PTPN13-201ENST00000316707 A0A1W2PP64 1363 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 RTL1A6NKG5 1358 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 KIAA1524Q8TCG1 905 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 C1orf115Q9H7X2 142 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 USP32Q8NFA0 1604 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 ZSCAN31Q96LW9 406 aaPredicted RBP5.75□□□□□ -1.49
PTPN13-201ENST00000316707 ANO2Q9NQ90 1003 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 OGFRQ9NZT2 677 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 FAM135BQ49AJ0 1406 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 NEMFO60524 1076 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 ADCY5O95622 1261 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 AEBP1Q8IUX7 1158 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 MAP3K4Q9Y6R4 1608 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 CEP85Q6P2H3 762 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 TET3O43151 1660 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 KIF2AO00139 706 aaPredicted RBP5.74□□□□□ -1.49
PTPN13-201ENST00000316707 HTATSF1O43719 755 aaKnown RBP5.74□□□□□ -1.49
PTPN13-201ENST00000316707 TUBB4AP04350 444 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 PDCP20941 246 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 FAM200AQ8TCP9 573 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 PAXBP1Q9Y5B6 917 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 KDM4AO75164 1064 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 ESYT1Q9BSJ8 1104 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 RGS12O14924 1447 aa5.74□□□□□ -1.49
PTPN13-201ENST00000316707 PPP4R3BQ5MIZ7 849 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 CGNQ9P2M7 1197 aaKnown RBP5.73□□□□□ -1.49
PTPN13-201ENST00000316707 ZFYVE16Q7Z3T8 1539 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 ELL2O00472 640 aaPredicted RBP5.73□□□□□ -1.49
PTPN13-201ENST00000316707 PKP1Q13835 747 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 HDAC5Q9UQL6 1122 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 ADGRB1O14514 1584 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 SH2B1Q9NRF2 756 aaPredicted RBP5.73□□□□□ -1.49
PTPN13-201ENST00000316707 POLKQ9UBT6 870 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 AATKQ6ZMQ8 1374 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 RNF20Q5VTR2 975 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.73□□□□□ -1.49
PTPN13-201ENST00000316707 SPHKAPQ2M3C7 1700 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 CTIFO43310 598 aaKnown RBP5.73□□□□□ -1.49
PTPN13-201ENST00000316707 NRDCO43847 1150 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 CFAP74Q9C0B2 1584 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 SOS1Q07889 1333 aaPredicted RBP5.73□□□□□ -1.49
PTPN13-201ENST00000316707 ZSCAN22P10073 491 aaPredicted RBP5.73□□□□□ -1.49
PTPN13-201ENST00000316707 CCDC112Q8NEF3 446 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 STK31Q9BXU1 1019 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 TSPYL1Q9H0U9 437 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 BCL2L12Q9HB09 334 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 SMC3Q9UQE7 1217 aa5.73□□□□□ -1.49
PTPN13-201ENST00000316707 CLTCL1P53675 1640 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 ATP7AQ04656 1500 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 SMTNL1A8MU46 457 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 HSP90AB4PQ58FF6 505 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 LRRCC1Q9C099 1032 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 STAP2Q9UGK3 403 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 COL3A1P02461 1466 aaPredicted RBP5.72□□□□□ -1.49
PTPN13-201ENST00000316707 PLEKHG5O94827 1062 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 GNAI2P04899 355 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 USP48Q86UV5 1035 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 TSPYL6Q8N831 410 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 LIMCH1Q9UPQ0 1083 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 ADGRB3O60242 1522 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 GOLGA6L4A6NEF3 574 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 EFCAB6Q5THR3 1501 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 MYOM1P52179 1685 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 CHL1O00533 1208 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 RUFY2Q8WXA3 655 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 ANKRD7Q92527 254 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 TTC12Q9H892 705 aaPredicted RBP5.72□□□□□ -1.49
PTPN13-201ENST00000316707 MYO3AQ8NEV4 1616 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 SCAND2PQ9GZW5 306 aaPredicted RBP5.72□□□□□ -1.49
PTPN13-201ENST00000316707 HCLS1P14317 486 aaPredicted RBP5.72□□□□□ -1.49
PTPN13-201ENST00000316707 GGT6Q6P531 493 aa5.72□□□□□ -1.49
PTPN13-201ENST00000316707 STX6O43752 255 aa5.71□□□□□ -1.49
PTPN13-201ENST00000316707 RTF1Q92541 710 aaKnown RBP5.71□□□□□ -1.49
PTPN13-201ENST00000316707 ZHX1Q9UKY1 873 aaPredicted RBP5.71□□□□□ -1.49
PTPN13-201ENST00000316707 NPHP3Q7Z494 1330 aa5.71□□□□□ -1.49
PTPN13-201ENST00000316707 CHMLP26374 656 aa5.71□□□□□ -1.5
PTPN13-201ENST00000316707 C8orf58Q8NAV2 365 aa5.71□□□□□ -1.5
PTPN13-201ENST00000316707 DDX19AQ9NUU7 478 aaKnown RBP5.71□□□□□ -1.5
PTPN13-201ENST00000316707 NPATQ14207 1427 aa5.71□□□□□ -1.5
PTPN13-201ENST00000316707 HSPA4P34932 840 aa5.71□□□□□ -1.5
PTPN13-201ENST00000316707 CBX1P83916 185 aa5.71□□□□□ -1.5
PTPN13-201ENST00000316707 PHACTR3Q96KR7 559 aa5.71□□□□□ -1.5
PTPN13-201ENST00000316707 F13A1P00488 732 aa5.71□□□□□ -1.5
PTPN13-201ENST00000316707 CDK11BP21127 795 aaKnown RBP5.71□□□□□ -1.5
PTPN13-201ENST00000316707 KRT85P78386 507 aa5.71□□□□□ -1.5
PTPN13-201ENST00000316707 PLCB2Q00722 1185 aa5.71□□□□□ -1.5
PTPN13-201ENST00000316707 ATP10DQ9P241 1426 aa5.71□□□□□ -1.5
PTPN13-201ENST00000316707 COG3Q96JB2 828 aa5.71□□□□□ -1.5
PTPN13-201ENST00000316707 TM6SF1Q9BZW5 370 aa5.71□□□□□ -1.5
PTPN13-201ENST00000316707 VIRMAQ69YN4 1812 aaKnown RBP5.71□□□□□ -1.5
PTPN13-201ENST00000316707 IL13P35225 146 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 MAP3K11Q16584 847 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 CHMP4CQ96CF2 233 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 CABP1Q9NZU7 370 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms