RNA–Protein interactions for RNA: ENST00000315962.8

TRIM55-202, Transcript of tripartite motif containing 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM55, Length 2,914 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-202ENST00000315962 USP35Q9P2H5 1018 aa9.63□□□□□ -0.87
TRIM55-202ENST00000315962 SBNO1A3KN83 1393 aa9.63□□□□□ -0.87
TRIM55-202ENST00000315962 ZNF335Q9H4Z2 1342 aaPredicted RBP9.63□□□□□ -0.87
TRIM55-202ENST00000315962 SLC4A2P04920 1241 aa9.63□□□□□ -0.87
TRIM55-202ENST00000315962 ZNF853P0CG23 659 aa9.63□□□□□ -0.87
TRIM55-202ENST00000315962 KNDC1Q76NI1 1749 aa9.63□□□□□ -0.87
TRIM55-202ENST00000315962 IL16Q14005 1332 aa9.63□□□□□ -0.87
TRIM55-202ENST00000315962 IL17REQ8NFR9 667 aa9.62□□□□□ -0.87
TRIM55-202ENST00000315962 PIK3R4Q99570 1358 aa9.62□□□□□ -0.87
TRIM55-202ENST00000315962 LMOD3Q0VAK6 560 aa9.62□□□□□ -0.87
TRIM55-202ENST00000315962 MRPL50Q8N5N7 158 aaKnown RBP9.62□□□□□ -0.87
TRIM55-202ENST00000315962 EIF2S2P20042 333 aaKnown RBP9.62□□□□□ -0.87
TRIM55-202ENST00000315962 CALD1Q05682 793 aaKnown RBP9.62□□□□□ -0.87
TRIM55-202ENST00000315962 G2E3Q7L622 706 aa9.62□□□□□ -0.87
TRIM55-202ENST00000315962 ADGRB2O60241 1585 aa9.62□□□□□ -0.87
TRIM55-202ENST00000315962 ADAMTSL3P82987 1691 aa9.62□□□□□ -0.87
TRIM55-202ENST00000315962 ITSN1Q15811 1721 aa9.61□□□□□ -0.87
TRIM55-202ENST00000315962 PEAK1Q9H792 1746 aa9.61□□□□□ -0.87
TRIM55-202ENST00000315962 IPO8O15397 1037 aaKnown RBP9.61□□□□□ -0.87
TRIM55-202ENST00000315962 PDZRN3Q9UPQ7 1066 aa9.61□□□□□ -0.87
TRIM55-202ENST00000315962 MON2Q7Z3U7 1717 aa9.61□□□□□ -0.87
TRIM55-202ENST00000315962 ADGRL3Q9HAR2 1447 aa9.61□□□□□ -0.87
TRIM55-202ENST00000315962 CHL1O00533 1208 aa9.61□□□□□ -0.87
TRIM55-202ENST00000315962 KCNQ3O43525 872 aa9.61□□□□□ -0.87
TRIM55-202ENST00000315962 NLRP2Q9NX02 1062 aa9.61□□□□□ -0.87
TRIM55-202ENST00000315962 IGSF1Q8N6C5 1336 aa9.61□□□□□ -0.87
TRIM55-202ENST00000315962 ANKRD26Q9UPS8 1709 aa9.6□□□□□ -0.87
TRIM55-202ENST00000315962 GNAT3A8MTJ3 354 aa9.6□□□□□ -0.87
TRIM55-202ENST00000315962 ANXA1P04083 346 aa9.6□□□□□ -0.87
TRIM55-202ENST00000315962 IP6K1Q92551 441 aa9.6□□□□□ -0.87
TRIM55-202ENST00000315962 CSB-PGBD3P0DP91 1061 aa9.6□□□□□ -0.87
TRIM55-202ENST00000315962 ANKRD24Q8TF21 1146 aa9.6□□□□□ -0.87
TRIM55-202ENST00000315962 XRN1Q8IZH2 1706 aaKnown RBP9.59□□□□□ -0.87
TRIM55-202ENST00000315962 LNPKQ9C0E8 428 aa9.59□□□□□ -0.87
TRIM55-202ENST00000315962 DDX19BQ9UMR2 479 aa9.59□□□□□ -0.87
TRIM55-202ENST00000315962 KIF16BQ96L93 1317 aa9.59□□□□□ -0.87
TRIM55-202ENST00000315962 GZF1Q9H116 711 aaPredicted RBP9.59□□□□□ -0.87
TRIM55-202ENST00000315962 RWDD1Q9H446 243 aaPredicted RBP9.59□□□□□ -0.87
TRIM55-202ENST00000315962 ZBTB40Q9NUA8 1239 aa9.59□□□□□ -0.87
TRIM55-202ENST00000315962 AKAP12Q02952 1782 aa9.59□□□□□ -0.87
TRIM55-202ENST00000315962 ANKARQ7Z5J8 1434 aa9.59□□□□□ -0.87
TRIM55-202ENST00000315962 PIK3C2AO00443 1686 aa9.59□□□□□ -0.87
TRIM55-202ENST00000315962 NALCNQ8IZF0 1738 aa9.59□□□□□ -0.88
TRIM55-202ENST00000315962 CT47B1P0C2W7 299 aaPredicted RBP9.58□□□□□ -0.88
TRIM55-202ENST00000315962 HAP1P54257 671 aaPredicted RBP9.58□□□□□ -0.88
TRIM55-202ENST00000315962 ZNF530Q6P9A1 599 aaPredicted RBP9.58□□□□□ -0.88
TRIM55-202ENST00000315962 ARHGEF25Q86VW2 580 aa9.58□□□□□ -0.88
TRIM55-202ENST00000315962 GAS2L2Q8NHY3 880 aa9.58□□□□□ -0.88
TRIM55-202ENST00000315962 PRAMEF22A3QJZ6 481 aa9.58□□□□□ -0.88
TRIM55-202ENST00000315962 ZBTB7BO15156 539 aaPredicted RBP9.58□□□□□ -0.88
TRIM55-202ENST00000315962 ALDH1L2Q3SY69 923 aa9.58□□□□□ -0.88
TRIM55-202ENST00000315962 KCNH5Q8NCM2 988 aa9.58□□□□□ -0.88
TRIM55-202ENST00000315962 TOPAZ1Q8N9V7 1692 aa9.57□□□□□ -0.88
TRIM55-202ENST00000315962 C1orf167Q5SNV9 1468 aa9.57□□□□□ -0.88
TRIM55-202ENST00000315962 NRKQ7Z2Y5 1582 aa9.57□□□□□ -0.88
TRIM55-202ENST00000315962 NCBP3Q53F19 620 aaKnown RBP9.56□□□□□ -0.88
TRIM55-202ENST00000315962 ANKRD45Q5TZF3 282 aa9.56□□□□□ -0.88
TRIM55-202ENST00000315962 USP19O94966 1318 aa9.56□□□□□ -0.88
TRIM55-202ENST00000315962 ARHGEF10O15013 1369 aa9.56□□□□□ -0.88
TRIM55-202ENST00000315962 PIP4K2AP48426 406 aaPredicted RBP9.56□□□□□ -0.88
TRIM55-202ENST00000315962 SIRT2Q8IXJ6 389 aa9.56□□□□□ -0.88
TRIM55-202ENST00000315962 PHAXQ9H814 394 aaKnown RBP9.56□□□□□ -0.88
TRIM55-202ENST00000315962 SLC39A6Q13433 755 aa9.55□□□□□ -0.88
TRIM55-202ENST00000315962 FKBP5Q13451 457 aaPredicted RBP9.55□□□□□ -0.88
TRIM55-202ENST00000315962 CADPS2Q86UW7 1296 aa9.55□□□□□ -0.88
TRIM55-202ENST00000315962 MEIS3Q99687 375 aa9.55□□□□□ -0.88
TRIM55-202ENST00000315962 CRB1P82279 1406 aa9.55□□□□□ -0.88
TRIM55-202ENST00000315962 BRINP3Q76B58 766 aa9.55□□□□□ -0.88
TRIM55-202ENST00000315962 CHD2O14647 1828 aaKnown RBP9.55□□□□□ -0.88
TRIM55-202ENST00000315962 KDRP35968 1356 aa9.55□□□□□ -0.88
TRIM55-202ENST00000315962 TEFQ10587 303 aa9.55□□□□□ -0.88
TRIM55-202ENST00000315962 TAF7Q15545 349 aaPredicted RBP9.55□□□□□ -0.88
TRIM55-202ENST00000315962 STRN4Q9NRL3 753 aa9.55□□□□□ -0.88
TRIM55-202ENST00000315962 SLAIN2Q9P270 581 aa9.55□□□□□ -0.88
TRIM55-202ENST00000315962 GOLGB1Q14789 3259 aaKnown RBP9.54□□□□□ -0.88
TRIM55-202ENST00000315962 BTBD11A6QL63 1104 aa9.54□□□□□ -0.88
TRIM55-202ENST00000315962 C1orf141Q5JVX7 400 aa9.54□□□□□ -0.88
TRIM55-202ENST00000315962 C16orf71Q8IYS4 520 aaPredicted RBP9.53□□□□□ -0.88
TRIM55-202ENST00000315962 STK31Q9BXU1 1019 aa9.53□□□□□ -0.88
TRIM55-202ENST00000315962 FMN2Q9NZ56 1722 aa9.53□□□□□ -0.88
TRIM55-202ENST00000315962 HDGFL1Q5TGJ6 251 aa9.53□□□□□ -0.88
TRIM55-202ENST00000315962 MSH6P52701 1360 aa9.53□□□□□ -0.88
TRIM55-202ENST00000315962 MAP3K5Q99683 1374 aa9.53□□□□□ -0.88
TRIM55-202ENST00000315962 SMARCA5O60264 1052 aaPredicted RBP9.52□□□□□ -0.88
TRIM55-202ENST00000315962 AIMP1Q12904 312 aaKnown RBP9.52□□□□□ -0.89
TRIM55-202ENST00000315962 NFATC2IPQ8NCF5 419 aa9.52□□□□□ -0.89
TRIM55-202ENST00000315962 RAPGEF4Q8WZA2 1011 aa9.52□□□□□ -0.89
TRIM55-202ENST00000315962 PRDM11Q9NQV5 511 aa9.52□□□□□ -0.89
TRIM55-202ENST00000315962 KIAA0232Q92628 1395 aa9.52□□□□□ -0.89
TRIM55-202ENST00000315962 ERBB3P21860 1342 aa9.52□□□□□ -0.89
TRIM55-202ENST00000315962 FLIIQ13045 1269 aa9.52□□□□□ -0.89
TRIM55-202ENST00000315962 API5Q9BZZ5 524 aaKnown RBP9.52□□□□□ -0.89
TRIM55-202ENST00000315962 CHPF2Q9P2E5 772 aa9.52□□□□□ -0.89
TRIM55-202ENST00000315962 NPHP3Q7Z494 1330 aa9.51□□□□□ -0.89
TRIM55-202ENST00000315962 DLG5Q8TDM6 1919 aa9.51□□□□□ -0.89
TRIM55-202ENST00000315962 PLEKHO1Q53GL0 409 aaPredicted RBP9.51□□□□□ -0.89
TRIM55-202ENST00000315962 PANK2Q9BZ23 570 aa9.51□□□□□ -0.89
TRIM55-202ENST00000315962 ABCC4O15439 1325 aa9.51□□□□□ -0.89
TRIM55-202ENST00000315962 MST1RQ04912 1400 aa9.51□□□□□ -0.89
TRIM55-202ENST00000315962 DDX54Q8TDD1 881 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms