RNA–Protein interactions for RNA: ENST00000299543.8

CTDP1-202, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTDP1, Length 3,380 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-202ENST00000299543 GBP4Q96PP9 640 aa16.59■□□□□ 0.25
CTDP1-202ENST00000299543 K7ELQ4 463 aaPredicted RBP16.59■□□□□ 0.25
CTDP1-202ENST00000299543 KIF2CQ99661 725 aa16.59■□□□□ 0.25
CTDP1-202ENST00000299543 TSPYL4Q9UJ04 414 aa16.59■□□□□ 0.25
CTDP1-202ENST00000299543 NGDNQ8NEJ9 315 aaKnown RBP16.58■□□□□ 0.25
CTDP1-202ENST00000299543 GAS2L2Q8NHY3 880 aa16.58■□□□□ 0.25
CTDP1-202ENST00000299543 TTC21BQ7Z4L5 1316 aa16.58■□□□□ 0.25
CTDP1-202ENST00000299543 PDE4CQ08493 712 aa16.58■□□□□ 0.24
CTDP1-202ENST00000299543 RICTORQ6R327 1708 aa16.58■□□□□ 0.24
CTDP1-202ENST00000299543 SSFA2P28290 1259 aa16.58■□□□□ 0.24
CTDP1-202ENST00000299543 AMPHP49418 695 aa16.58■□□□□ 0.24
CTDP1-202ENST00000299543 TSHZ3Q63HK5 1081 aa16.57■□□□□ 0.24
CTDP1-202ENST00000299543 SNX21Q969T3 373 aa16.57■□□□□ 0.24
CTDP1-202ENST00000299543 BCL11BQ9C0K0 894 aaPredicted RBP16.57■□□□□ 0.24
CTDP1-202ENST00000299543 ATP7BP35670 1465 aa16.57■□□□□ 0.24
CTDP1-202ENST00000299543 G2E3Q7L622 706 aa16.57■□□□□ 0.24
CTDP1-202ENST00000299543 DCTPP1Q9H773 170 aa16.57■□□□□ 0.24
CTDP1-202ENST00000299543 FOXD4L5Q5VV16 416 aaPredicted RBP16.56■□□□□ 0.24
CTDP1-202ENST00000299543 FOXD4L4Q8WXT5 416 aaPredicted RBP16.56■□□□□ 0.24
CTDP1-202ENST00000299543 CPS1P31327 1500 aa16.56■□□□□ 0.24
CTDP1-202ENST00000299543 CPSF1Q10570 1443 aaKnown RBP16.55■□□□□ 0.24
CTDP1-202ENST00000299543 CEP85Q6P2H3 762 aa16.55■□□□□ 0.24
CTDP1-202ENST00000299543 TTC22Q5TAA0 569 aa16.54■□□□□ 0.24
CTDP1-202ENST00000299543 NOL8Q76FK4 1167 aaKnown RBP16.54■□□□□ 0.24
CTDP1-202ENST00000299543 EXOC6BQ9Y2D4 811 aa16.54■□□□□ 0.24
CTDP1-202ENST00000299543 PTCH1Q13635 1447 aa16.54■□□□□ 0.24
CTDP1-202ENST00000299543 CHL1O00533 1208 aa16.54■□□□□ 0.24
CTDP1-202ENST00000299543 ANKRD44Q8N8A2 993 aa16.54■□□□□ 0.24
CTDP1-202ENST00000299543 SDSP20132 328 aa16.54■□□□□ 0.24
CTDP1-202ENST00000299543 CASC1Q6TDU7 716 aa16.54■□□□□ 0.24
CTDP1-202ENST00000299543 PPP6R1Q9UPN7 881 aa16.54■□□□□ 0.24
CTDP1-202ENST00000299543 MRE11P49959 708 aa16.53■□□□□ 0.24
CTDP1-202ENST00000299543 HAP1P54257 671 aaPredicted RBP16.53■□□□□ 0.24
CTDP1-202ENST00000299543 MTHFSDQ2M296 383 aaKnown RBP16.53■□□□□ 0.24
CTDP1-202ENST00000299543 GOLGA6L22H0YM25 854 aa16.53■□□□□ 0.24
CTDP1-202ENST00000299543 INTS3Q68E01 1043 aaKnown RBP16.53■□□□□ 0.24
CTDP1-202ENST00000299543 R3HCC1Q9Y3T6 440 aaKnown RBP16.53■□□□□ 0.24
CTDP1-202ENST00000299543 ROBO2Q9HCK4 1378 aa16.53■□□□□ 0.24
CTDP1-202ENST00000299543 LTKP29376 864 aa16.52■□□□□ 0.24
CTDP1-202ENST00000299543 MSH6P52701 1360 aa16.52■□□□□ 0.24
CTDP1-202ENST00000299543 RPAP2Q8IXW5 612 aaPredicted RBP16.52■□□□□ 0.24
CTDP1-202ENST00000299543 DDX49Q9Y6V7 483 aaKnown RBP16.52■□□□□ 0.24
CTDP1-202ENST00000299543 AATKQ6ZMQ8 1374 aa16.52■□□□□ 0.23
CTDP1-202ENST00000299543 TPM2P07951 284 aa16.52■□□□□ 0.23
CTDP1-202ENST00000299543 FKBP5Q13451 457 aaPredicted RBP16.52■□□□□ 0.23
CTDP1-202ENST00000299543 RAB3GAP1Q15042 981 aa16.52■□□□□ 0.23
CTDP1-202ENST00000299543 STK31Q9BXU1 1019 aa16.51■□□□□ 0.23
CTDP1-202ENST00000299543 NLRP6P59044 892 aa16.51■□□□□ 0.23
CTDP1-202ENST00000299543 MCTP1Q6DN14 999 aa16.51■□□□□ 0.23
CTDP1-202ENST00000299543 KIF20BQ96Q89 1820 aa16.51■□□□□ 0.23
CTDP1-202ENST00000299543 JARID2Q92833 1246 aaPredicted RBP16.51■□□□□ 0.23
CTDP1-202ENST00000299543 CDK12Q9NYV4 1490 aaPredicted RBP16.5■□□□□ 0.23
CTDP1-202ENST00000299543 MAP3K19Q56UN5 1328 aa16.5■□□□□ 0.23
CTDP1-202ENST00000299543 CLTCQ00610 1675 aaKnown RBP16.5■□□□□ 0.23
CTDP1-202ENST00000299543 TRIM6-TRIM34B2RNG4 842 aa16.5■□□□□ 0.23
CTDP1-202ENST00000299543 RILPL2Q969X0 211 aa16.5■□□□□ 0.23
CTDP1-202ENST00000299543 CIZ1Q9ULV3 898 aaPredicted RBP16.5■□□□□ 0.23
CTDP1-202ENST00000299543 PIK3R4Q99570 1358 aa16.5■□□□□ 0.23
CTDP1-202ENST00000299543 HMMRO75330 724 aa16.49■□□□□ 0.23
CTDP1-202ENST00000299543 TPRNQ4KMQ1 711 aa16.49■□□□□ 0.23
CTDP1-202ENST00000299543 USP26Q9BXU7 913 aa16.49■□□□□ 0.23
CTDP1-202ENST00000299543 AMOTL2Q9Y2J4 779 aa16.49■□□□□ 0.23
CTDP1-202ENST00000299543 ANKRD26Q9UPS8 1709 aa16.48■□□□□ 0.23
CTDP1-202ENST00000299543 RABEP1Q15276 862 aa16.48■□□□□ 0.23
CTDP1-202ENST00000299543 ANP32BQ92688 251 aaKnown RBP16.48■□□□□ 0.23
CTDP1-202ENST00000299543 PKP1Q13835 747 aa16.48■□□□□ 0.23
CTDP1-202ENST00000299543 RBM33Q96EV2 1170 aaKnown RBP16.48■□□□□ 0.23
CTDP1-202ENST00000299543 EID1Q9Y6B2 187 aa16.48■□□□□ 0.23
CTDP1-202ENST00000299543 DDIT3P35638 169 aa16.47■□□□□ 0.23
CTDP1-202ENST00000299543 FOXD4L6Q3SYB3 417 aaPredicted RBP16.47■□□□□ 0.23
CTDP1-202ENST00000299543 FOXD4L3Q6VB84 417 aaPredicted RBP16.47■□□□□ 0.23
CTDP1-202ENST00000299543 BBXQ8WY36 941 aaPredicted RBP16.47■□□□□ 0.23
CTDP1-202ENST00000299543 EYA1Q99502 592 aa16.47■□□□□ 0.23
CTDP1-202ENST00000299543 TNRQ92752 1358 aa16.47■□□□□ 0.23
CTDP1-202ENST00000299543 USHBP1Q8N6Y0 703 aa16.47■□□□□ 0.23
CTDP1-202ENST00000299543 RTL1A6NKG5 1358 aa16.47■□□□□ 0.23
CTDP1-202ENST00000299543 ZGPATQ8N5A5 531 aaKnown RBP16.47■□□□□ 0.23
CTDP1-202ENST00000299543 CHAMP1Q96JM3 812 aa16.47■□□□□ 0.23
CTDP1-202ENST00000299543 MSNP26038 577 aaKnown RBP16.46■□□□□ 0.23
CTDP1-202ENST00000299543 EIF2S2P20042 333 aaKnown RBP16.46■□□□□ 0.23
CTDP1-202ENST00000299543 ST18O60284 1047 aa16.46■□□□□ 0.22
CTDP1-202ENST00000299543 BAG4O95429 457 aaKnown RBP16.46■□□□□ 0.22
CTDP1-202ENST00000299543 PTPRCP08575 1304 aa16.45■□□□□ 0.22
CTDP1-202ENST00000299543 XPCQ01831 940 aaPredicted RBP16.45■□□□□ 0.22
CTDP1-202ENST00000299543 GNAI2P04899 355 aa16.44■□□□□ 0.22
CTDP1-202ENST00000299543 NEK4P51957 841 aa16.44■□□□□ 0.22
CTDP1-202ENST00000299543 REC8O95072 547 aa16.44■□□□□ 0.22
CTDP1-202ENST00000299543 SKOR2Q2VWA4 1001 aaPredicted RBP16.44■□□□□ 0.22
CTDP1-202ENST00000299543 IL1RAPL2Q9NP60 686 aa16.44■□□□□ 0.22
CTDP1-202ENST00000299543 CAVIN1Q6NZI2 390 aaKnown RBP16.44■□□□□ 0.22
CTDP1-202ENST00000299543 DLC1Q96QB1 1528 aa16.44■□□□□ 0.22
CTDP1-202ENST00000299543 TMEM2Q9UHN6 1383 aa16.44■□□□□ 0.22
CTDP1-202ENST00000299543 ANO2Q9NQ90 1003 aa16.43■□□□□ 0.22
CTDP1-202ENST00000299543 ERC2O15083 957 aa16.43■□□□□ 0.22
CTDP1-202ENST00000299543 MAP4K4O95819 1239 aaPredicted RBP16.43■□□□□ 0.22
CTDP1-202ENST00000299543 PDE1AP54750 535 aa16.43■□□□□ 0.22
CTDP1-202ENST00000299543 CDC42BPGQ6DT37 1551 aa16.43■□□□□ 0.22
CTDP1-202ENST00000299543 PLEKHG3A1L390 1219 aa16.43■□□□□ 0.22
CTDP1-202ENST00000299543 FLIIQ13045 1269 aa16.43■□□□□ 0.22
CTDP1-202ENST00000299543 TSC1Q92574 1164 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms