RNA–Protein interactions for RNA: ENST00000296302.11

PBRM1-201, Transcript of polybromo 1, humanhuman

TSL 1 (best) BASIC

Gene PBRM1, Length 5,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBRM1-201ENST00000296302 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.97□□□□□ -0.331e-6■■■■■ 30.9
PBRM1-201ENST00000296302 USP25Q9UHP3 1055 aa12.97□□□□□ -0.33
PBRM1-201ENST00000296302 BAG4O95429 457 aaKnown RBP12.97□□□□□ -0.33
PBRM1-201ENST00000296302 CASTP20810 708 aaKnown RBP12.97□□□□□ -0.33
PBRM1-201ENST00000296302 ZMYND15Q9H091 742 aa12.97□□□□□ -0.33
PBRM1-201ENST00000296302 SRGAP3O43295 1099 aa12.97□□□□□ -0.33
PBRM1-201ENST00000296302 MAP4K4O95819 1239 aaPredicted RBP12.97□□□□□ -0.33
PBRM1-201ENST00000296302 TNNT1P13805 278 aa12.97□□□□□ -0.33
PBRM1-201ENST00000296302 SSH1Q8WYL5 1049 aa12.97□□□□□ -0.33
PBRM1-201ENST00000296302 ARHGAP29Q52LW3 1261 aa12.96□□□□□ -0.33
PBRM1-201ENST00000296302 BMP2KLQ5H9B9 411 aa12.96□□□□□ -0.33
PBRM1-201ENST00000296302 SUPT6HQ7KZ85 1726 aaKnown RBP12.96□□□□□ -0.33
PBRM1-201ENST00000296302 KDM4AO75164 1064 aa12.96□□□□□ -0.33
PBRM1-201ENST00000296302 MX1P20591 662 aa12.96□□□□□ -0.33
PBRM1-201ENST00000296302 PRAM1Q96QH2 718 aa12.96□□□□□ -0.33
PBRM1-201ENST00000296302 TROQ12816 1431 aaPredicted RBP12.96□□□□□ -0.33
PBRM1-201ENST00000296302 CTAGE5O15320 804 aa12.96□□□□□ -0.33
PBRM1-201ENST00000296302 EPB41L2O43491 1005 aaKnown RBP12.96□□□□□ -0.33
PBRM1-201ENST00000296302 CFAP100Q494V2 611 aa12.96□□□□□ -0.33
PBRM1-201ENST00000296302 CDK5RAP3Q96JB5 506 aa12.96□□□□□ -0.33
PBRM1-201ENST00000296302 ZNF692Q9BU19 519 aaPredicted RBP12.96□□□□□ -0.33
PBRM1-201ENST00000296302 CTNNA3Q9UI47 895 aa12.96□□□□□ -0.33
PBRM1-201ENST00000296302 CAMK4Q16566 473 aa12.95□□□□□ -0.34
PBRM1-201ENST00000296302 AACSQ86V21 672 aa12.95□□□□□ -0.34
PBRM1-201ENST00000296302 CLIP2Q9UDT6 1046 aa12.95□□□□□ -0.34
PBRM1-201ENST00000296302 CCAR1Q8IX12 1150 aaKnown RBP12.95□□□□□ -0.34
PBRM1-201ENST00000296302 ATAD2Q6PL18 1390 aa12.95□□□□□ -0.34
PBRM1-201ENST00000296302 XRCC6P12956 609 aaKnown RBP eCLIP12.95□□□□□ -0.34
PBRM1-201ENST00000296302 PPP4R3BQ5MIZ7 849 aa12.94□□□□□ -0.34
PBRM1-201ENST00000296302 TTC39AQ5SRH9 613 aa12.94□□□□□ -0.34
PBRM1-201ENST00000296302 CCDC83Q8IWF9 413 aa12.94□□□□□ -0.34
PBRM1-201ENST00000296302 IL1RAPL2Q9NP60 686 aa12.94□□□□□ -0.34
PBRM1-201ENST00000296302 DDX19AQ9NUU7 478 aaKnown RBP12.94□□□□□ -0.34
PBRM1-201ENST00000296302 NOL7Q9UMY1 257 aaKnown RBP12.94□□□□□ -0.34
PBRM1-201ENST00000296302 NSD3Q9BZ95 1437 aa12.94□□□□□ -0.34
PBRM1-201ENST00000296302 RAB11FIP3O75154 756 aa12.94□□□□□ -0.34
PBRM1-201ENST00000296302 SLC3A2P08195 630 aaKnown RBP12.94□□□□□ -0.34
PBRM1-201ENST00000296302 TOP2BQ02880 1626 aa12.94□□□□□ -0.34
PBRM1-201ENST00000296302 HECW1Q76N89 1606 aa12.94□□□□□ -0.34
PBRM1-201ENST00000296302 CCDC148Q8NFR7 591 aa12.94□□□□□ -0.34
PBRM1-201ENST00000296302 CRACR2AQ9BSW2 395 aa12.94□□□□□ -0.34
PBRM1-201ENST00000296302 SYNJ2O15056 1496 aa12.94□□□□□ -0.34
PBRM1-201ENST00000296302 GLRX3O76003 335 aaKnown RBP12.94□□□□□ -0.34
PBRM1-201ENST00000296302 NCAPD3P42695 1498 aa12.94□□□□□ -0.34
PBRM1-201ENST00000296302 GSDMDP57764 484 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 FERMT3Q86UX7 667 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 KIF1BPQ96EK5 621 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 CABP1Q9NZU7 370 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 ADCY5O95622 1261 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 MCM3P25205 808 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 MAP9Q49MG5 647 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 ZSCAN25Q6NSZ9 544 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 CDK19Q9BWU1 502 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 NACAP1Q9BZK3 213 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 LIMCH1Q9UPQ0 1083 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 CTDP1Q9Y5B0 961 aaPredicted RBP12.93□□□□□ -0.34
PBRM1-201ENST00000296302 MAP3K1Q13233 1512 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 FYB1O15117 783 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 URI1O94763 535 aaPredicted RBP12.93□□□□□ -0.34
PBRM1-201ENST00000296302 CAVIN2O95810 425 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 NLRP2Q9NX02 1062 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 EXOC6BQ9Y2D4 811 aa12.93□□□□□ -0.34
PBRM1-201ENST00000296302 RPGRIP1LQ68CZ1 1315 aa12.92□□□□□ -0.34
PBRM1-201ENST00000296302 CCDC69A6NI79 296 aa12.92□□□□□ -0.34
PBRM1-201ENST00000296302 ZRSR2Q15696 482 aaKnown RBP12.92□□□□□ -0.34
PBRM1-201ENST00000296302 AFAP1Q8N556 730 aa12.92□□□□□ -0.34
PBRM1-201ENST00000296302 SHTN1A0MZ66 631 aa12.92□□□□□ -0.34
PBRM1-201ENST00000296302 FAM193AP78312 1265 aa12.92□□□□□ -0.34
PBRM1-201ENST00000296302 ZFYVE27Q5T4F4 411 aa12.92□□□□□ -0.34
PBRM1-201ENST00000296302 WASF1Q92558 559 aa12.92□□□□□ -0.34
PBRM1-201ENST00000296302 C16orf45Q96MC5 204 aaPredicted RBP12.92□□□□□ -0.34
PBRM1-201ENST00000296302 FAM107BQ9H098 131 aa12.92□□□□□ -0.34
PBRM1-201ENST00000296302 PAXBP1Q9Y5B6 917 aa12.92□□□□□ -0.34
PBRM1-201ENST00000296302 ZSCAN23Q3MJ62 389 aa12.92□□□□□ -0.34
PBRM1-201ENST00000296302 LRSAM1Q6UWE0 723 aa12.92□□□□□ -0.34
PBRM1-201ENST00000296302 SIL1Q9H173 461 aa12.91□□□□□ -0.34
PBRM1-201ENST00000296302 LRRFIP2Q9Y608 721 aaKnown RBP12.91□□□□□ -0.34
PBRM1-201ENST00000296302 KIF5CO60282 957 aa12.91□□□□□ -0.34
PBRM1-201ENST00000296302 CASQ1P31415 396 aa12.91□□□□□ -0.34
PBRM1-201ENST00000296302 TBC1D9Q6ZT07 1266 aa12.91□□□□□ -0.34
PBRM1-201ENST00000296302 JAKMIP3Q5VZ66 844 aa12.91□□□□□ -0.34
PBRM1-201ENST00000296302 IGHDP01880 384 aa12.9□□□□□ -0.34
PBRM1-201ENST00000296302 BMS1Q14692 1282 aaKnown RBP12.9□□□□□ -0.34
PBRM1-201ENST00000296302 SYCP1Q15431 976 aa12.9□□□□□ -0.34
PBRM1-201ENST00000296302 POTEB2H3BUK9 544 aa12.9□□□□□ -0.34
PBRM1-201ENST00000296302 TRIM27P14373 513 aa12.9□□□□□ -0.34
PBRM1-201ENST00000296302 DDX11Q96FC9 970 aa12.9□□□□□ -0.34
PBRM1-201ENST00000296302 TOP1P11387 765 aaKnown RBP12.9□□□□□ -0.34
PBRM1-201ENST00000296302 HS1BP3Q53T59 392 aa12.9□□□□□ -0.34
PBRM1-201ENST00000296302 PRPF40BQ6NWY9 871 aaKnown RBP12.9□□□□□ -0.34
PBRM1-201ENST00000296302 KIAA1328Q86T90 577 aa12.9□□□□□ -0.34
PBRM1-201ENST00000296302 NUTM1Q86Y26 1132 aa12.9□□□□□ -0.34
PBRM1-201ENST00000296302 GRIN2BQ13224 1484 aa12.9□□□□□ -0.34
PBRM1-201ENST00000296302 UBE2HP62256 183 aa12.9□□□□□ -0.34
PBRM1-201ENST00000296302 CENPHQ9H3R5 247 aa12.9□□□□□ -0.34
PBRM1-201ENST00000296302 ZHX1Q9UKY1 873 aaPredicted RBP12.9□□□□□ -0.34
PBRM1-201ENST00000296302 CEP131Q9UPN4 1083 aa12.9□□□□□ -0.34
PBRM1-201ENST00000296302 SMARCA5O60264 1052 aaPredicted RBP12.89□□□□□ -0.35
PBRM1-201ENST00000296302 KRT18P05783 430 aaKnown RBP12.89□□□□□ -0.35
PBRM1-201ENST00000296302 NUTM2GQ5VZR2 741 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms