RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ARHGEF10O15013 1369 aa23.01■■□□□ 1.27
SHKBP1-201ENST00000291842 RTF1Q92541 710 aaKnown RBP23■■□□□ 1.27
SHKBP1-201ENST00000291842 CRB1P82279 1406 aa23■■□□□ 1.27
SHKBP1-201ENST00000291842 GSE1Q14687 1217 aa23■■□□□ 1.27
SHKBP1-201ENST00000291842 SLC4A2P04920 1241 aa22.98■■□□□ 1.27
SHKBP1-201ENST00000291842 INTS3Q68E01 1043 aaKnown RBP22.98■■□□□ 1.27
SHKBP1-201ENST00000291842 C14orf37Q86TY3 774 aa22.98■■□□□ 1.27
SHKBP1-201ENST00000291842 LTV1Q96GA3 475 aaPredicted RBP22.98■■□□□ 1.27
SHKBP1-201ENST00000291842 ANTXR1Q9H6X2 564 aa22.98■■□□□ 1.27
SHKBP1-201ENST00000291842 TSPYL4Q9UJ04 414 aa22.98■■□□□ 1.27
SHKBP1-201ENST00000291842 CEP170BQ9Y4F5 1589 aaPredicted RBP22.98■■□□□ 1.27
SHKBP1-201ENST00000291842 PIK3C2AO00443 1686 aa22.98■■□□□ 1.27
SHKBP1-201ENST00000291842 BMP2KLQ5H9B9 411 aa22.98■■□□□ 1.27
SHKBP1-201ENST00000291842 RGS12O14924 1447 aa22.97■■□□□ 1.27
SHKBP1-201ENST00000291842 FMN2Q9NZ56 1722 aa22.97■■□□□ 1.27
SHKBP1-201ENST00000291842 KIAA0232Q92628 1395 aa22.97■■□□□ 1.27
SHKBP1-201ENST00000291842 ABTB2Q8N961 1025 aa22.97■■□□□ 1.27
SHKBP1-201ENST00000291842 HAP1P54257 671 aaPredicted RBP22.96■■□□□ 1.27
SHKBP1-201ENST00000291842 IGSF1Q8N6C5 1336 aa22.95■■□□□ 1.26
SHKBP1-201ENST00000291842 MSH6P52701 1360 aa22.94■■□□□ 1.26
SHKBP1-201ENST00000291842 XRN1Q8IZH2 1706 aaKnown RBP22.94■■□□□ 1.26
SHKBP1-201ENST00000291842 HOXC9P31274 260 aa22.94■■□□□ 1.26
SHKBP1-201ENST00000291842 G2E3Q7L622 706 aa22.94■■□□□ 1.26
SHKBP1-201ENST00000291842 KDRP35968 1356 aa22.94■■□□□ 1.26
SHKBP1-201ENST00000291842 MEIS3Q99687 375 aa22.93■■□□□ 1.26
SHKBP1-201ENST00000291842 F6X3S4 739 aa22.92■■□□□ 1.26
SHKBP1-201ENST00000291842 APBB1O00213 710 aa22.92■■□□□ 1.26
SHKBP1-201ENST00000291842 C16orf71Q8IYS4 520 aaPredicted RBP22.92■■□□□ 1.26
SHKBP1-201ENST00000291842 KIF24Q5T7B8 1368 aa22.92■■□□□ 1.26
SHKBP1-201ENST00000291842 SLC4A10Q6U841 1118 aa22.92■■□□□ 1.26
SHKBP1-201ENST00000291842 DCTPP1Q9H773 170 aa22.92■■□□□ 1.26
SHKBP1-201ENST00000291842 GAS2L2Q8NHY3 880 aa22.91■■□□□ 1.26
SHKBP1-201ENST00000291842 PTPRCP08575 1304 aa22.91■■□□□ 1.26
SHKBP1-201ENST00000291842 TBC1D9Q6ZT07 1266 aa22.91■■□□□ 1.26
SHKBP1-201ENST00000291842 USHBP1Q8N6Y0 703 aa22.91■■□□□ 1.26
SHKBP1-201ENST00000291842 NECTIN2Q92692 538 aa22.91■■□□□ 1.26
SHKBP1-201ENST00000291842 CEP85Q6P2H3 762 aa22.9■■□□□ 1.26
SHKBP1-201ENST00000291842 ANKRD44Q8N8A2 993 aa22.9■■□□□ 1.26
SHKBP1-201ENST00000291842 ANKARQ7Z5J8 1434 aa22.89■■□□□ 1.26
SHKBP1-201ENST00000291842 ATP10DQ9P241 1426 aa22.89■■□□□ 1.25
SHKBP1-201ENST00000291842 RBM25P49756 843 aaKnown RBP22.89■■□□□ 1.25
SHKBP1-201ENST00000291842 PLEKHM2Q8IWE5 1019 aa22.89■■□□□ 1.25
SHKBP1-201ENST00000291842 GSPT1P15170 499 aaKnown RBP22.88■■□□□ 1.25
SHKBP1-201ENST00000291842 RTL1A6NKG5 1358 aa22.88■■□□□ 1.25
SHKBP1-201ENST00000291842 OTUD7AQ8TE49 926 aaPredicted RBP22.87■■□□□ 1.25
SHKBP1-201ENST00000291842 GNAT3A8MTJ3 354 aa22.87■■□□□ 1.25
SHKBP1-201ENST00000291842 SMARCA5O60264 1052 aaPredicted RBP22.87■■□□□ 1.25
SHKBP1-201ENST00000291842 PLEKHG5O94827 1062 aa22.87■■□□□ 1.25
SHKBP1-201ENST00000291842 HSCBQ8IWL3 235 aa22.87■■□□□ 1.25
SHKBP1-201ENST00000291842 PHF8Q9UPP1 1060 aa22.87■■□□□ 1.25
SHKBP1-201ENST00000291842 ZBTB7CA1YPR0 619 aa22.86■■□□□ 1.25
SHKBP1-201ENST00000291842 RPAP2Q8IXW5 612 aaPredicted RBP22.86■■□□□ 1.25
SHKBP1-201ENST00000291842 ANKLE2Q86XL3 938 aa22.85■■□□□ 1.25
SHKBP1-201ENST00000291842 IL17REQ8NFR9 667 aa22.84■■□□□ 1.25
SHKBP1-201ENST00000291842 MARF1Q9Y4F3 1742 aaKnown RBP22.84■■□□□ 1.25
SHKBP1-201ENST00000291842 STK31Q9BXU1 1019 aa22.83■■□□□ 1.24
SHKBP1-201ENST00000291842 ESCO1Q5FWF5 840 aa22.82■■□□□ 1.24
SHKBP1-201ENST00000291842 KIF2CQ99661 725 aa22.82■■□□□ 1.24
SHKBP1-201ENST00000291842 CDC45O75419 566 aa22.82■■□□□ 1.24
SHKBP1-201ENST00000291842 NWD1Q149M9 1564 aa22.82■■□□□ 1.24
SHKBP1-201ENST00000291842 TTC22Q5TAA0 569 aa22.81■■□□□ 1.24
SHKBP1-201ENST00000291842 RBM42Q9BTD8 480 aaKnown RBP22.81■■□□□ 1.24
SHKBP1-201ENST00000291842 SETD1BQ9UPS6 1966 aaKnown RBP22.8■■□□□ 1.24
SHKBP1-201ENST00000291842 HTATSF1O43719 755 aaKnown RBP22.8■■□□□ 1.24
SHKBP1-201ENST00000291842 FKBP5Q13451 457 aaPredicted RBP22.8■■□□□ 1.24
SHKBP1-201ENST00000291842 IL27Q8NEV9 243 aa22.8■■□□□ 1.24
SHKBP1-201ENST00000291842 MAP3K5Q99683 1374 aa22.79■■□□□ 1.24
SHKBP1-201ENST00000291842 PSME1Q06323 249 aa22.79■■□□□ 1.24
SHKBP1-201ENST00000291842 FLIIQ13045 1269 aa22.79■■□□□ 1.24
SHKBP1-201ENST00000291842 CD2BP2O95400 341 aaKnown RBP22.78■■□□□ 1.24
SHKBP1-201ENST00000291842 CCT4P50991 539 aaKnown RBP22.78■■□□□ 1.24
SHKBP1-201ENST00000291842 CHMP5Q9NZZ3 219 aa22.78■■□□□ 1.24
SHKBP1-201ENST00000291842 XPCQ01831 940 aaPredicted RBP22.78■■□□□ 1.24
SHKBP1-201ENST00000291842 CCDC30Q5VVM6 783 aa22.78■■□□□ 1.24
SHKBP1-201ENST00000291842 TAF7Q15545 349 aaPredicted RBP22.77■■□□□ 1.24
SHKBP1-201ENST00000291842 NBPF6Q5VWK0 638 aa22.77■■□□□ 1.24
SHKBP1-201ENST00000291842 NBPF4Q96M43 638 aa22.77■■□□□ 1.24
SHKBP1-201ENST00000291842 SNX21Q969T3 373 aa22.76■■□□□ 1.23
SHKBP1-201ENST00000291842 BRPF3Q9ULD4 1205 aa22.76■■□□□ 1.23
SHKBP1-201ENST00000291842 FOXD4L1Q9NU39 408 aa22.76■■□□□ 1.23
SHKBP1-201ENST00000291842 HSP90AB1P08238 724 aaKnown RBP22.75■■□□□ 1.23
SHKBP1-201ENST00000291842 IP6K1Q92551 441 aa22.75■■□□□ 1.23
SHKBP1-201ENST00000291842 CHD2O14647 1828 aaKnown RBP22.75■■□□□ 1.23
SHKBP1-201ENST00000291842 SDSP20132 328 aa22.74■■□□□ 1.23
SHKBP1-201ENST00000291842 EXOC6BQ9Y2D4 811 aa22.74■■□□□ 1.23
SHKBP1-201ENST00000291842 LTN1O94822 1766 aa22.74■■□□□ 1.23
SHKBP1-201ENST00000291842 HMMRO75330 724 aa22.74■■□□□ 1.23
SHKBP1-201ENST00000291842 GNAI2P04899 355 aa22.74■■□□□ 1.23
SHKBP1-201ENST00000291842 LRRC59Q96AG4 307 aaKnown RBP22.74■■□□□ 1.23
SHKBP1-201ENST00000291842 LRRC37A3O60309 1634 aa22.73■■□□□ 1.23
SHKBP1-201ENST00000291842 LGR6Q9HBX8 967 aa22.73■■□□□ 1.23
SHKBP1-201ENST00000291842 MCM4P33991 863 aa22.72■■□□□ 1.23
SHKBP1-201ENST00000291842 ORAI2Q96SN7 254 aa22.72■■□□□ 1.23
SHKBP1-201ENST00000291842 LMOD2Q6P5Q4 547 aa22.71■■□□□ 1.23
SHKBP1-201ENST00000291842 PHAXQ9H814 394 aaKnown RBP22.71■■□□□ 1.23
SHKBP1-201ENST00000291842 EIF2S2P20042 333 aaKnown RBP22.7■■□□□ 1.22
SHKBP1-201ENST00000291842 HDGFL1Q5TGJ6 251 aa22.7■■□□□ 1.22
SHKBP1-201ENST00000291842 TSHZ3Q63HK5 1081 aa22.7■■□□□ 1.22
SHKBP1-201ENST00000291842 USP54Q70EL1 1684 aa22.7■■□□□ 1.22
SHKBP1-201ENST00000291842 PNMA6EA0A0J9YXQ4 647 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms