RNA–Protein interactions for RNA: ENST00000278544.9

ACER3-201, Transcript of alkaline ceramidase 3, humanhuman

TSL 1 (best)

Gene ACER3, Length 3,500 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACER3-201ENST00000278544 IL17REQ8NFR9 667 aa17.22■□□□□ 0.35
ACER3-201ENST00000278544 CCDC27Q2M243 656 aa17.22■□□□□ 0.35
ACER3-201ENST00000278544 C8orf58Q8NAV2 365 aa17.22■□□□□ 0.35
ACER3-201ENST00000278544 GNAT3A8MTJ3 354 aa17.21■□□□□ 0.35
ACER3-201ENST00000278544 TRMT2AQ8IZ69 625 aaKnown RBP17.21■□□□□ 0.35
ACER3-201ENST00000278544 GAS2L2Q8NHY3 880 aa17.21■□□□□ 0.35
ACER3-201ENST00000278544 PANK1Q8TE04 598 aa17.21■□□□□ 0.35
ACER3-201ENST00000278544 C8orf37Q96NL8 207 aa17.21■□□□□ 0.35
ACER3-201ENST00000278544 SMC4Q9NTJ3 1288 aa17.21■□□□□ 0.35
ACER3-201ENST00000278544 TSPYL4Q9UJ04 414 aa17.21■□□□□ 0.35
ACER3-201ENST00000278544 CRBNQ96SW2 442 aa17.2■□□□□ 0.34
ACER3-201ENST00000278544 C1orf141Q5JVX7 400 aa17.2■□□□□ 0.34
ACER3-201ENST00000278544 ALS2Q96Q42 1657 aa17.19■□□□□ 0.34
ACER3-201ENST00000278544 MYT1Q01538 1121 aa17.19■□□□□ 0.34
ACER3-201ENST00000278544 RTL1A6NKG5 1358 aa17.19■□□□□ 0.34
ACER3-201ENST00000278544 TATP17735 454 aaPredicted RBP17.18■□□□□ 0.34
ACER3-201ENST00000278544 LMOD3Q0VAK6 560 aa17.18■□□□□ 0.34
ACER3-201ENST00000278544 PLEKHO1Q53GL0 409 aaPredicted RBP17.18■□□□□ 0.34
ACER3-201ENST00000278544 KCNQ3O43525 872 aa17.18■□□□□ 0.34
ACER3-201ENST00000278544 SSH1Q8WYL5 1049 aa17.18■□□□□ 0.34
ACER3-201ENST00000278544 RARSP54136 660 aaKnown RBP17.18■□□□□ 0.34
ACER3-201ENST00000278544 GNAI1P63096 354 aa17.18■□□□□ 0.34
ACER3-201ENST00000278544 ZNF428Q96B54 188 aa17.18■□□□□ 0.34
ACER3-201ENST00000278544 KDRP35968 1356 aa17.18■□□□□ 0.34
ACER3-201ENST00000278544 SLIT3O75094 1523 aa17.17■□□□□ 0.34
ACER3-201ENST00000278544 NGEFQ8N5V2 710 aa17.17■□□□□ 0.34
ACER3-201ENST00000278544 COG6Q9Y2V7 657 aa17.17■□□□□ 0.34
ACER3-201ENST00000278544 HSPA1LP34931 641 aa17.17■□□□□ 0.34
ACER3-201ENST00000278544 BCL11AQ9H165 835 aa17.17■□□□□ 0.34
ACER3-201ENST00000278544 TEFQ10587 303 aa17.16■□□□□ 0.34
ACER3-201ENST00000278544 SLC39A6Q13433 755 aa17.16■□□□□ 0.34
ACER3-201ENST00000278544 CFAP44Q96MT7 982 aa17.16■□□□□ 0.34
ACER3-201ENST00000278544 TWISTNBQ3B726 338 aaPredicted RBP17.16■□□□□ 0.34
ACER3-201ENST00000278544 NGLY1Q96IV0 654 aa17.16■□□□□ 0.34
ACER3-201ENST00000278544 CAMTA1Q9Y6Y1 1673 aa17.15■□□□□ 0.34
ACER3-201ENST00000278544 EIF2S2P20042 333 aaKnown RBP17.15■□□□□ 0.34
ACER3-201ENST00000278544 KIF24Q5T7B8 1368 aa17.14■□□□□ 0.33
ACER3-201ENST00000278544 IFT57Q9NWB7 429 aa17.14■□□□□ 0.33
ACER3-201ENST00000278544 DLG5Q8TDM6 1919 aa17.14■□□□□ 0.33
ACER3-201ENST00000278544 WDR17Q8IZU2 1322 aa17.13■□□□□ 0.33
ACER3-201ENST00000278544 CCDC136Q96JN2 1154 aa17.13■□□□□ 0.33
ACER3-201ENST00000278544 MAP3K5Q99683 1374 aa17.13■□□□□ 0.33
ACER3-201ENST00000278544 RLBP1P12271 317 aa17.12■□□□□ 0.33
ACER3-201ENST00000278544 CALD1Q05682 793 aaKnown RBP17.12■□□□□ 0.33
ACER3-201ENST00000278544 NOB1Q9ULX3 412 aaKnown RBP17.12■□□□□ 0.33
ACER3-201ENST00000278544 CYP27B1O15528 508 aa17.12■□□□□ 0.33
ACER3-201ENST00000278544 ANXA1P04083 346 aa17.12■□□□□ 0.33
ACER3-201ENST00000278544 SKAP1Q86WV1 359 aa17.12■□□□□ 0.33
ACER3-201ENST00000278544 NFATC2IPQ8NCF5 419 aa17.12■□□□□ 0.33
ACER3-201ENST00000278544 SYTL4Q96C24 671 aaPredicted RBP17.12■□□□□ 0.33
ACER3-201ENST00000278544 MEGF6O75095 1541 aa17.11■□□□□ 0.33
ACER3-201ENST00000278544 PHRF1Q9P1Y6 1649 aaKnown RBP17.11■□□□□ 0.33
ACER3-201ENST00000278544 PRAMEF22A3QJZ6 481 aa17.1■□□□□ 0.33
ACER3-201ENST00000278544 MEX3CQ5U5Q3 659 aaKnown RBP17.1■□□□□ 0.33
ACER3-201ENST00000278544 BTBD11A6QL63 1104 aa17.1■□□□□ 0.33
ACER3-201ENST00000278544 VAMP4O75379 141 aa17.1■□□□□ 0.33
ACER3-201ENST00000278544 PIP4K2AP48426 406 aaPredicted RBP17.1■□□□□ 0.33
ACER3-201ENST00000278544 CHL1O00533 1208 aa17.09■□□□□ 0.33
ACER3-201ENST00000278544 ZNF853P0CG23 659 aa17.09■□□□□ 0.33
ACER3-201ENST00000278544 AKAP4Q5JQC9 854 aa17.09■□□□□ 0.33
ACER3-201ENST00000278544 FTSJ3Q8IY81 847 aaKnown RBP17.09■□□□□ 0.33
ACER3-201ENST00000278544 TAF7Q15545 349 aaPredicted RBP17.09■□□□□ 0.33
ACER3-201ENST00000278544 FAM182BQ5T319 152 aa17.09■□□□□ 0.33
ACER3-201ENST00000278544 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.09■□□□□ 0.33
ACER3-201ENST00000278544 RGPD1P0DJD0 1748 aa17.09■□□□□ 0.33
ACER3-201ENST00000278544 CPDO75976 1380 aa17.09■□□□□ 0.33
ACER3-201ENST00000278544 RNMTO43148 476 aaKnown RBP17.09■□□□□ 0.33
ACER3-201ENST00000278544 AMOTQ4VCS5 1084 aa17.09■□□□□ 0.33
ACER3-201ENST00000278544 SPG7Q9UQ90 795 aa17.09■□□□□ 0.33
ACER3-201ENST00000278544 IL2RBP14784 551 aa17.08■□□□□ 0.33
ACER3-201ENST00000278544 ZCRB1Q8TBF4 217 aaKnown RBP17.08■□□□□ 0.32
ACER3-201ENST00000278544 IL16Q14005 1332 aa17.08■□□□□ 0.32
ACER3-201ENST00000278544 COL5A2P05997 1499 aaPredicted RBP17.07■□□□□ 0.32
ACER3-201ENST00000278544 PHLPP1O60346 1717 aa17.07■□□□□ 0.32
ACER3-201ENST00000278544 PHKG2P15735 406 aa17.07■□□□□ 0.32
ACER3-201ENST00000278544 PPP4R2Q9NY27 417 aa17.07■□□□□ 0.32
ACER3-201ENST00000278544 RNF123Q5XPI4 1314 aa17.07■□□□□ 0.32
ACER3-201ENST00000278544 NHSL1Q5SYE7 1610 aa17.06■□□□□ 0.32
ACER3-201ENST00000278544 ITPRIPQ8IWB1 547 aa17.06■□□□□ 0.32
ACER3-201ENST00000278544 PTCD1O75127 700 aaKnown RBP17.06■□□□□ 0.32
ACER3-201ENST00000278544 IFNL2Q8IZJ0 200 aa17.06■□□□□ 0.32
ACER3-201ENST00000278544 SLC4A2P04920 1241 aa17.05■□□□□ 0.32
ACER3-201ENST00000278544 FAM98CQ17RN3 349 aaKnown RBP17.05■□□□□ 0.32
ACER3-201ENST00000278544 CRB1P82279 1406 aa17.05■□□□□ 0.32
ACER3-201ENST00000278544 TRIM27P14373 513 aa17.05■□□□□ 0.32
ACER3-201ENST00000278544 CARD10Q9BWT7 1032 aa17.05■□□□□ 0.32
ACER3-201ENST00000278544 EP400Q96L91 3159 aa17.05■□□□□ 0.32
ACER3-201ENST00000278544 SLC4A10Q6U841 1118 aa17.04■□□□□ 0.32
ACER3-201ENST00000278544 G2E3Q7L622 706 aa17.04■□□□□ 0.32
ACER3-201ENST00000278544 ACSBG1Q96GR2 724 aa17.04■□□□□ 0.32
ACER3-201ENST00000278544 F6X3S4 739 aa17.04■□□□□ 0.32
ACER3-201ENST00000278544 CABP4P57796 275 aa17.04■□□□□ 0.32
ACER3-201ENST00000278544 ZKSCAN2Q63HK3 967 aa17.03■□□□□ 0.32
ACER3-201ENST00000278544 USP54Q70EL1 1684 aa17.03■□□□□ 0.32
ACER3-201ENST00000278544 ZNF330Q9Y3S2 320 aaPredicted RBP17.02■□□□□ 0.31
ACER3-201ENST00000278544 C1orf115Q9H7X2 142 aa17.01■□□□□ 0.31
ACER3-201ENST00000278544 COL18A1P39060 1754 aa17.01■□□□□ 0.31
ACER3-201ENST00000278544 TMEM57Q8N5G2 664 aa17.01■□□□□ 0.31
ACER3-201ENST00000278544 HDGFL1Q5TGJ6 251 aa17.01■□□□□ 0.31
ACER3-201ENST00000278544 DZIP1LQ8IYY4 767 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms