RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 NUP62CLQ9H1M0 184 aa12.74□□□□□ -0.37
CD44-201ENST00000263398 GLRX3O76003 335 aaKnown RBP12.73□□□□□ -0.37
CD44-201ENST00000263398 CEP126Q9P2H0 1117 aa12.73□□□□□ -0.37
CD44-201ENST00000263398 CTNNA3Q9UI47 895 aa12.73□□□□□ -0.37
CD44-201ENST00000263398 GNAT3A8MTJ3 354 aa12.73□□□□□ -0.37
CD44-201ENST00000263398 SERPINC1P01008 464 aa12.73□□□□□ -0.37
CD44-201ENST00000263398 MX1P20591 662 aa12.73□□□□□ -0.37
CD44-201ENST00000263398 GPATCH8Q9UKJ3 1502 aaKnown RBP12.73□□□□□ -0.37
CD44-201ENST00000263398 ZSCAN30Q86W11 494 aa12.73□□□□□ -0.37
CD44-201ENST00000263398 CCDC112Q8NEF3 446 aa12.73□□□□□ -0.37
CD44-201ENST00000263398 FAM177BA6PVY3 158 aa12.72□□□□□ -0.37
CD44-201ENST00000263398 BTBD11A6QL63 1104 aa12.72□□□□□ -0.37
CD44-201ENST00000263398 CCDC57Q2TAC2 916 aa12.72□□□□□ -0.37
CD44-201ENST00000263398 EPS15P42566 896 aa12.72□□□□□ -0.37
CD44-201ENST00000263398 ZSCAN25Q6NSZ9 544 aa12.72□□□□□ -0.37
CD44-201ENST00000263398 MPNDQ8N594 471 aa12.72□□□□□ -0.37
CD44-201ENST00000263398 TBC1D2Q9BYX2 928 aa12.72□□□□□ -0.37
CD44-201ENST00000263398 MYL6BP14649 208 aa12.72□□□□□ -0.37
CD44-201ENST00000263398 CEP57L1Q8IYX8 460 aa12.72□□□□□ -0.37
CD44-201ENST00000263398 CAGE1Q8TC20 777 aa12.72□□□□□ -0.37
CD44-201ENST00000263398 GNL3LQ9NVN8 582 aaKnown RBP12.72□□□□□ -0.37
CD44-201ENST00000263398 RAB11FIP3O75154 756 aa12.72□□□□□ -0.37
CD44-201ENST00000263398 UPF3BQ9BZI7 483 aaKnown RBP12.72□□□□□ -0.37
CD44-201ENST00000263398 MTMR7Q9Y216 660 aa12.72□□□□□ -0.37
CD44-201ENST00000263398 TRIM27P14373 513 aa12.71□□□□□ -0.37
CD44-201ENST00000263398 RBM10P98175 930 aaKnown RBP12.71□□□□□ -0.37
CD44-201ENST00000263398 DACH1Q9UI36 760 aa12.71□□□□□ -0.37
CD44-201ENST00000263398 TTLL5Q6EMB2 1281 aa12.71□□□□□ -0.37
CD44-201ENST00000263398 MCM10Q7L590 875 aa12.71□□□□□ -0.37
CD44-201ENST00000263398 ATP10BO94823 1461 aa12.71□□□□□ -0.37
CD44-201ENST00000263398 MAGEC2Q9UBF1 373 aaPredicted RBP12.71□□□□□ -0.38
CD44-201ENST00000263398 CTTNBP2Q8WZ74 1663 aa12.71□□□□□ -0.38
CD44-201ENST00000263398 CDKL5O76039 1030 aa12.71□□□□□ -0.38
CD44-201ENST00000263398 NOM1Q5C9Z4 860 aaKnown RBP12.71□□□□□ -0.38
CD44-201ENST00000263398 BRPF1P55201 1214 aaPredicted RBP12.7□□□□□ -0.38
CD44-201ENST00000263398 NUTM1Q86Y26 1132 aa12.7□□□□□ -0.38
CD44-201ENST00000263398 UGGT2Q9NYU1 1516 aa12.7□□□□□ -0.38
CD44-201ENST00000263398 ADGRF5Q8IZF2 1346 aa12.7□□□□□ -0.38
CD44-201ENST00000263398 CASTP20810 708 aaKnown RBP12.7□□□□□ -0.38
CD44-201ENST00000263398 DCTN1Q14203 1278 aa12.7□□□□□ -0.38
CD44-201ENST00000263398 CT47A1Q5JQC4 288 aaPredicted RBP12.7□□□□□ -0.38
CD44-201ENST00000263398 SYCE3A1L190 88 aa12.7□□□□□ -0.38
CD44-201ENST00000263398 CCDC66A2RUB6 948 aa12.7□□□□□ -0.38
CD44-201ENST00000263398 FKBP4Q02790 459 aaKnown RBP eCLIP12.7□□□□□ -0.38
CD44-201ENST00000263398 ANO8Q9HCE9 1232 aaPredicted RBP12.69□□□□□ -0.38
CD44-201ENST00000263398 MAP3K11Q16584 847 aa12.69□□□□□ -0.38
CD44-201ENST00000263398 WAPLQ7Z5K2 1190 aa12.69□□□□□ -0.38
CD44-201ENST00000263398 MIS18AQ9NYP9 233 aa12.69□□□□□ -0.38
CD44-201ENST00000263398 TOM1L2Q6ZVM7 507 aa12.69□□□□□ -0.38
CD44-201ENST00000263398 STRN4Q9NRL3 753 aa12.69□□□□□ -0.38
CD44-201ENST00000263398 ZNHIT6Q9NWK9 470 aaKnown RBP12.69□□□□□ -0.38
CD44-201ENST00000263398 SCAF11Q99590 1463 aaKnown RBP12.69□□□□□ -0.38
CD44-201ENST00000263398 BMP2KLQ5H9B9 411 aa12.69□□□□□ -0.38
CD44-201ENST00000263398 PPFIBP1Q86W92 1011 aa12.69□□□□□ -0.38
CD44-201ENST00000263398 CDK5RAP3Q96JB5 506 aa12.69□□□□□ -0.38
CD44-201ENST00000263398 PRM3Q9NNZ6 103 aa12.69□□□□□ -0.38
CD44-201ENST00000263398 CWC15Q9P013 229 aaKnown RBP12.69□□□□□ -0.38
CD44-201ENST00000263398 KIF14Q15058 1648 aa12.68□□□□□ -0.38
CD44-201ENST00000263398 CCDC69A6NI79 296 aa12.68□□□□□ -0.38
CD44-201ENST00000263398 CBFA2T2O43439 604 aa12.68□□□□□ -0.38
CD44-201ENST00000263398 SMARCA5O60264 1052 aaPredicted RBP12.68□□□□□ -0.38
CD44-201ENST00000263398 KCNH5Q8NCM2 988 aa12.68□□□□□ -0.38
CD44-201ENST00000263398 MPHOSPH8Q99549 860 aa12.68□□□□□ -0.38
CD44-201ENST00000263398 NSD2O96028 1365 aa12.68□□□□□ -0.38
CD44-201ENST00000263398 TAF7Q15545 349 aaPredicted RBP12.68□□□□□ -0.38
CD44-201ENST00000263398 FILIP1Q7Z7B0 1213 aa12.68□□□□□ -0.38
CD44-201ENST00000263398 UQCRHLA0A096LP55 91 aa12.67□□□□□ -0.38
CD44-201ENST00000263398 UQCRHP07919 91 aa12.67□□□□□ -0.38
CD44-201ENST00000263398 ANKLE2Q86XL3 938 aa12.67□□□□□ -0.38
CD44-201ENST00000263398 SH2B1Q9NRF2 756 aaPredicted RBP12.67□□□□□ -0.38
CD44-201ENST00000263398 ADAMTS12P58397 1594 aa12.67□□□□□ -0.38
CD44-201ENST00000263398 DHX29Q7Z478 1369 aaKnown RBP12.67□□□□□ -0.38
CD44-201ENST00000263398 NME9Q86XW9 330 aa12.67□□□□□ -0.38
CD44-201ENST00000263398 DDX54Q8TDD1 881 aaKnown RBP12.67□□□□□ -0.38
CD44-201ENST00000263398 SCAND2PQ9GZW5 306 aaPredicted RBP12.67□□□□□ -0.38
CD44-201ENST00000263398 RAPGEF6Q8TEU7 1601 aa12.67□□□□□ -0.38
CD44-201ENST00000263398 STIM1Q13586 685 aa12.67□□□□□ -0.38
CD44-201ENST00000263398 FERMT3Q86UX7 667 aa12.67□□□□□ -0.38
CD44-201ENST00000263398 CCAR1Q8IX12 1150 aaKnown RBP12.67□□□□□ -0.38
CD44-201ENST00000263398 EMILIN1Q9Y6C2 1016 aa12.67□□□□□ -0.38
CD44-201ENST00000263398 IKQ13123 557 aaPredicted RBP12.66□□□□□ -0.38
CD44-201ENST00000263398 LARP1Q6PKG0 1096 aaKnown RBP12.66□□□□□ -0.38
CD44-201ENST00000263398 CCDC83Q8IWF9 413 aa12.66□□□□□ -0.38
CD44-201ENST00000263398 NOL7Q9UMY1 257 aaKnown RBP12.66□□□□□ -0.38
CD44-201ENST00000263398 SAMD1Q6SPF0 538 aaPredicted RBP12.66□□□□□ -0.38
CD44-201ENST00000263398 TNPO1Q92973 898 aaKnown RBP12.66□□□□□ -0.38
CD44-201ENST00000263398 PRDM11Q9NQV5 511 aa12.66□□□□□ -0.38
CD44-201ENST00000263398 PLEKHH1Q9ULM0 1364 aa12.66□□□□□ -0.38
CD44-201ENST00000263398 RRP9O43818 475 aaKnown RBP12.66□□□□□ -0.38
CD44-201ENST00000263398 PRPF40BQ6NWY9 871 aaKnown RBP12.66□□□□□ -0.38
CD44-201ENST00000263398 TBC1D32Q96NH3 1257 aa12.66□□□□□ -0.38
CD44-201ENST00000263398 U3KPZ7 1027 aaPredicted RBP12.66□□□□□ -0.38
CD44-201ENST00000263398 IL16Q14005 1332 aa12.66□□□□□ -0.38
CD44-201ENST00000263398 SSFA2P28290 1259 aa12.65□□□□□ -0.38
CD44-201ENST00000263398 ODF2Q5BJF6 829 aa12.65□□□□□ -0.38
CD44-201ENST00000263398 NUP133Q8WUM0 1156 aa12.65□□□□□ -0.38
CD44-201ENST00000263398 PTPRCP08575 1304 aa12.65□□□□□ -0.38
CD44-201ENST00000263398 SMTNL1A8MU46 457 aa12.65□□□□□ -0.38
CD44-201ENST00000263398 DDX11Q96FC9 970 aa12.65□□□□□ -0.38
CD44-201ENST00000263398 DISP3Q9P2K9 1392 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms