RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 RBM25P49756 843 aaKnown RBP12.52□□□□□ -0.4
LIG3-201ENST00000262327 PNNQ9H307 717 aaKnown RBP12.52□□□□□ -0.4
LIG3-201ENST00000262327 MON2Q7Z3U7 1717 aa12.52□□□□□ -0.41
LIG3-201ENST00000262327 ANKRD26Q9UPS8 1709 aa12.52□□□□□ -0.41
LIG3-201ENST00000262327 NCOA3Q9Y6Q9 1424 aa12.52□□□□□ -0.41
LIG3-201ENST00000262327 NALCNQ8IZF0 1738 aa12.52□□□□□ -0.41
LIG3-201ENST00000262327 LRRC7Q96NW7 1537 aa12.51□□□□□ -0.41
LIG3-201ENST00000262327 RBM10P98175 930 aaKnown RBP12.51□□□□□ -0.41
LIG3-201ENST00000262327 BMP2KLQ5H9B9 411 aa12.51□□□□□ -0.41
LIG3-201ENST00000262327 GAS2L3Q86XJ1 694 aa12.51□□□□□ -0.41
LIG3-201ENST00000262327 OTUD7AQ8TE49 926 aaPredicted RBP12.51□□□□□ -0.41
LIG3-201ENST00000262327 KIF20BQ96Q89 1820 aa12.51□□□□□ -0.41
LIG3-201ENST00000262327 PNPLA6Q8IY17 1366 aa12.5□□□□□ -0.41
LIG3-201ENST00000262327 HSP90AA2PQ14568 343 aaPredicted RBP12.5□□□□□ -0.41
LIG3-201ENST00000262327 STRCQ7RTU9 1775 aa12.5□□□□□ -0.41
LIG3-201ENST00000262327 SSFA2P28290 1259 aa12.5□□□□□ -0.41
LIG3-201ENST00000262327 AEBP1Q8IUX7 1158 aa12.5□□□□□ -0.41
LIG3-201ENST00000262327 GAS2L2Q8NHY3 880 aa12.5□□□□□ -0.41
LIG3-201ENST00000262327 GNAI1P63096 354 aa12.49□□□□□ -0.41
LIG3-201ENST00000262327 PROSER2Q86WR7 435 aaPredicted RBP12.49□□□□□ -0.41
LIG3-201ENST00000262327 GRPEL1Q9HAV7 217 aa12.49□□□□□ -0.41
LIG3-201ENST00000262327 ACEP12821 1306 aa12.49□□□□□ -0.41
LIG3-201ENST00000262327 SMARCA5O60264 1052 aaPredicted RBP12.49□□□□□ -0.41
LIG3-201ENST00000262327 GSPT1P15170 499 aaKnown RBP12.49□□□□□ -0.41
LIG3-201ENST00000262327 IL13P35225 146 aa12.49□□□□□ -0.41
LIG3-201ENST00000262327 DDX11L8A8MPP1 907 aa12.48□□□□□ -0.41
LIG3-201ENST00000262327 NAP1L5Q96NT1 182 aaPredicted RBP12.48□□□□□ -0.41
LIG3-201ENST00000262327 DDIT3P35638 169 aa12.48□□□□□ -0.41
LIG3-201ENST00000262327 GCC1Q96CN9 775 aa12.48□□□□□ -0.41
LIG3-201ENST00000262327 USP6P35125 1406 aa12.48□□□□□ -0.41
LIG3-201ENST00000262327 SNX21Q969T3 373 aa12.48□□□□□ -0.41
LIG3-201ENST00000262327 NRKQ7Z2Y5 1582 aa12.47□□□□□ -0.41
LIG3-201ENST00000262327 MIS18AQ9NYP9 233 aa12.47□□□□□ -0.41
LIG3-201ENST00000262327 K7ELQ4 463 aaPredicted RBP12.47□□□□□ -0.41
LIG3-201ENST00000262327 MCM10Q7L590 875 aa12.47□□□□□ -0.41
LIG3-201ENST00000262327 IFT57Q9NWB7 429 aa12.47□□□□□ -0.41
LIG3-201ENST00000262327 SSH2Q76I76 1423 aa12.47□□□□□ -0.41
LIG3-201ENST00000262327 MRE11P49959 708 aa12.46□□□□□ -0.41
LIG3-201ENST00000262327 FGD1P98174 961 aa12.46□□□□□ -0.41
LIG3-201ENST00000262327 TTC21BQ7Z4L5 1316 aa12.46□□□□□ -0.41
LIG3-201ENST00000262327 TTC21AQ8NDW8 1320 aa12.46□□□□□ -0.41
LIG3-201ENST00000262327 RAB3GAP1Q15042 981 aa12.46□□□□□ -0.41
LIG3-201ENST00000262327 C14orf37Q86TY3 774 aa12.46□□□□□ -0.42
LIG3-201ENST00000262327 PLEKHM2Q8IWE5 1019 aa12.46□□□□□ -0.42
LIG3-201ENST00000262327 C19orf44Q9H6X5 657 aa12.46□□□□□ -0.42
LIG3-201ENST00000262327 DCCP43146 1447 aa12.45□□□□□ -0.42
LIG3-201ENST00000262327 NGDNQ8NEJ9 315 aaKnown RBP12.45□□□□□ -0.42
LIG3-201ENST00000262327 COG3Q96JB2 828 aa12.45□□□□□ -0.42
LIG3-201ENST00000262327 CHAMP1Q96JM3 812 aa12.45□□□□□ -0.42
LIG3-201ENST00000262327 CFAP44Q96MT7 982 aa12.45□□□□□ -0.42
LIG3-201ENST00000262327 GBP4Q96PP9 640 aa12.45□□□□□ -0.42
LIG3-201ENST00000262327 ABCC4O15439 1325 aa12.45□□□□□ -0.42
LIG3-201ENST00000262327 CDC45O75419 566 aa12.45□□□□□ -0.42
LIG3-201ENST00000262327 ZNF853P0CG23 659 aa12.45□□□□□ -0.42
LIG3-201ENST00000262327 NCLP19338 710 aaKnown RBP12.45□□□□□ -0.42
LIG3-201ENST00000262327 SULT6B1Q6IMI4 303 aa12.45□□□□□ -0.42
LIG3-201ENST00000262327 STRCP1A6NGW2 1772 aa12.45□□□□□ -0.42
LIG3-201ENST00000262327 ERBB4Q15303 1308 aa12.44□□□□□ -0.42
LIG3-201ENST00000262327 RGPD8O14715 1765 aaPredicted RBP12.44□□□□□ -0.42
LIG3-201ENST00000262327 RRP9O43818 475 aaKnown RBP12.44□□□□□ -0.42
LIG3-201ENST00000262327 PDE4CQ08493 712 aa12.44□□□□□ -0.42
LIG3-201ENST00000262327 PKP1Q13835 747 aa12.44□□□□□ -0.42
LIG3-201ENST00000262327 FOXD4L5Q5VV16 416 aaPredicted RBP12.44□□□□□ -0.42
LIG3-201ENST00000262327 FOXD4L4Q8WXT5 416 aaPredicted RBP12.44□□□□□ -0.42
LIG3-201ENST00000262327 CALD1Q05682 793 aaKnown RBP12.43□□□□□ -0.42
LIG3-201ENST00000262327 ARHGAP45Q92619 1136 aa12.43□□□□□ -0.42
LIG3-201ENST00000262327 PHF8Q9UPP1 1060 aa12.43□□□□□ -0.42
LIG3-201ENST00000262327 TMEM94Q12767 1356 aa12.43□□□□□ -0.42
LIG3-201ENST00000262327 AATKQ6ZMQ8 1374 aa12.43□□□□□ -0.42
LIG3-201ENST00000262327 BRPF1P55201 1214 aaPredicted RBP12.43□□□□□ -0.42
LIG3-201ENST00000262327 TSHZ3Q63HK5 1081 aa12.43□□□□□ -0.42
LIG3-201ENST00000262327 SLC4A10Q6U841 1118 aa12.43□□□□□ -0.42
LIG3-201ENST00000262327 RBM33Q96EV2 1170 aaKnown RBP12.43□□□□□ -0.42
LIG3-201ENST00000262327 API5Q9BZZ5 524 aaKnown RBP12.43□□□□□ -0.42
LIG3-201ENST00000262327 ZNF428Q96B54 188 aa12.42□□□□□ -0.42
LIG3-201ENST00000262327 MEIS3Q99687 375 aa12.42□□□□□ -0.42
LIG3-201ENST00000262327 AK9Q5TCS8 1911 aa12.42□□□□□ -0.42
LIG3-201ENST00000262327 MAP2P11137 1827 aaKnown RBP12.42□□□□□ -0.42
LIG3-201ENST00000262327 DDX49Q9Y6V7 483 aaKnown RBP12.42□□□□□ -0.42
LIG3-201ENST00000262327 USP31Q70CQ4 1352 aa12.41□□□□□ -0.42
LIG3-201ENST00000262327 F6X3S4 739 aa12.41□□□□□ -0.42
LIG3-201ENST00000262327 MCTP1Q6DN14 999 aa12.41□□□□□ -0.42
LIG3-201ENST00000262327 OVOS2A0A0J9YW53 1432 aa12.41□□□□□ -0.42
LIG3-201ENST00000262327 OVOS2Q6IE36 1432 aa12.41□□□□□ -0.42
LIG3-201ENST00000262327 FOXO3O43524 673 aa12.41□□□□□ -0.42
LIG3-201ENST00000262327 TTC22Q5TAA0 569 aa12.41□□□□□ -0.42
LIG3-201ENST00000262327 TRIM44Q96DX7 344 aaPredicted RBP12.41□□□□□ -0.42
LIG3-201ENST00000262327 CHMP4BQ9H444 224 aaKnown RBP12.41□□□□□ -0.42
LIG3-201ENST00000262327 DCTPP1Q9H773 170 aa12.41□□□□□ -0.42
LIG3-201ENST00000262327 CIZ1Q9ULV3 898 aaPredicted RBP12.41□□□□□ -0.42
LIG3-201ENST00000262327 SDSP20132 328 aa12.4□□□□□ -0.42
LIG3-201ENST00000262327 ZGPATQ8N5A5 531 aaKnown RBP12.4□□□□□ -0.42
LIG3-201ENST00000262327 NECTIN2Q92692 538 aa12.4□□□□□ -0.42
LIG3-201ENST00000262327 BAG4O95429 457 aaKnown RBP12.4□□□□□ -0.42
LIG3-201ENST00000262327 ATF3P18847 181 aa12.4□□□□□ -0.42
LIG3-201ENST00000262327 EIF4A2Q14240 407 aaKnown RBP12.4□□□□□ -0.42
LIG3-201ENST00000262327 HSP90AB2PQ58FF8 381 aa12.4□□□□□ -0.42
LIG3-201ENST00000262327 KIF1AQ12756 1690 aa12.39□□□□□ -0.43
LIG3-201ENST00000262327 C1orf167Q5SNV9 1468 aa12.39□□□□□ -0.43
LIG3-201ENST00000262327 ESPNB1AK53 854 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms