RNA–Protein interactions for RNA: ENST00000262018.7

SGCA-201, Transcript of sarcoglycan alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SGCA, Length 1,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-201ENST00000262018 TTC21AQ8NDW8 1320 aa18.67■□□□□ 0.58
SGCA-201ENST00000262018 DNAJC5GQ8N7S2 189 aa18.66■□□□□ 0.58
SGCA-201ENST00000262018 KIAA1210Q9ULL0 1709 aa18.66■□□□□ 0.58
SGCA-201ENST00000262018 PRIM1P49642 420 aaKnown RBP18.66■□□□□ 0.58
SGCA-201ENST00000262018 ANKRD24Q8TF21 1146 aa18.66■□□□□ 0.58
SGCA-201ENST00000262018 CCNL1Q9UK58 526 aaPredicted RBP18.66■□□□□ 0.58
SGCA-201ENST00000262018 WWC3Q9ULE0 1092 aa18.66■□□□□ 0.58
SGCA-201ENST00000262018 EVC2Q86UK5 1308 aa18.63■□□□□ 0.57
SGCA-201ENST00000262018 COL13A1Q5TAT6 717 aaPredicted RBP18.63■□□□□ 0.57
SGCA-201ENST00000262018 L3MBTL2Q969R5 705 aa18.63■□□□□ 0.57
SGCA-201ENST00000262018 ANKRD36BQ8N2N9 1353 aa18.61■□□□□ 0.57
SGCA-201ENST00000262018 KTN1Q86UP2 1357 aaKnown RBP18.6■□□□□ 0.57
SGCA-201ENST00000262018 IGSF1Q8N6C5 1336 aa18.6■□□□□ 0.57
SGCA-201ENST00000262018 LY75O60449 1722 aa18.6■□□□□ 0.57
SGCA-201ENST00000262018 NSD2O96028 1365 aa18.59■□□□□ 0.57
SGCA-201ENST00000262018 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.59■□□□□ 0.57
SGCA-201ENST00000262018 TOMM70O94826 608 aa18.58■□□□□ 0.57
SGCA-201ENST00000262018 TNS4Q8IZW8 715 aa18.57■□□□□ 0.56
SGCA-201ENST00000262018 DOT1LQ8TEK3 1739 aa18.56■□□□□ 0.56
SGCA-201ENST00000262018 USP47Q96K76 1375 aa18.56■□□□□ 0.56
SGCA-201ENST00000262018 NME9Q86XW9 330 aa18.56■□□□□ 0.56
SGCA-201ENST00000262018 LTV1Q96GA3 475 aaPredicted RBP18.56■□□□□ 0.56
SGCA-201ENST00000262018 USP31Q70CQ4 1352 aa18.55■□□□□ 0.56
SGCA-201ENST00000262018 PRELPP51888 382 aa18.55■□□□□ 0.56
SGCA-201ENST00000262018 DIEXFQ68CQ4 756 aaKnown RBP18.55■□□□□ 0.56
SGCA-201ENST00000262018 FLAD1Q8NFF5 587 aa18.55■□□□□ 0.56
SGCA-201ENST00000262018 LTN1O94822 1766 aa18.54■□□□□ 0.56
SGCA-201ENST00000262018 HTRA3P83110 453 aa18.53■□□□□ 0.56
SGCA-201ENST00000262018 KLRG1Q96E93 195 aa18.53■□□□□ 0.56
SGCA-201ENST00000262018 ZCRB1Q8TBF4 217 aaKnown RBP18.52■□□□□ 0.56
SGCA-201ENST00000262018 NMRK2Q9NPI5 230 aa18.51■□□□□ 0.55
SGCA-201ENST00000262018 JMYQ8N9B5 988 aa18.5■□□□□ 0.55
SGCA-201ENST00000262018 WDR90Q96KV7 1748 aa18.5■□□□□ 0.55
SGCA-201ENST00000262018 IP6K1Q92551 441 aa18.49■□□□□ 0.55
SGCA-201ENST00000262018 MON2Q7Z3U7 1717 aa18.48■□□□□ 0.55
SGCA-201ENST00000262018 C5P01031 1676 aa18.48■□□□□ 0.55
SGCA-201ENST00000262018 USP54Q70EL1 1684 aa18.47■□□□□ 0.55
SGCA-201ENST00000262018 PHF14O94880 888 aa18.47■□□□□ 0.55
SGCA-201ENST00000262018 HMGB2P26583 209 aaKnown RBP18.47■□□□□ 0.55
SGCA-201ENST00000262018 SMIM5Q71RC9 77 aa18.47■□□□□ 0.55
SGCA-201ENST00000262018 C16orf71Q8IYS4 520 aaPredicted RBP18.47■□□□□ 0.55
SGCA-201ENST00000262018 RBM46Q8TBY0 533 aaKnown RBP18.47■□□□□ 0.55
SGCA-201ENST00000262018 AK7Q96M32 723 aa18.47■□□□□ 0.55
SGCA-201ENST00000262018 SBNO2Q9Y2G9 1366 aa18.46■□□□□ 0.55
SGCA-201ENST00000262018 CICQ96RK0 1608 aaPredicted RBP18.46■□□□□ 0.55
SGCA-201ENST00000262018 AMIGO3Q86WK7 504 aa18.45■□□□□ 0.54
SGCA-201ENST00000262018 PALLDQ8WX93 1383 aa18.44■□□□□ 0.54
SGCA-201ENST00000262018 FAM208AQ9UK61 1670 aaKnown RBP18.44■□□□□ 0.54
SGCA-201ENST00000262018 MEGF6O75095 1541 aa18.44■□□□□ 0.54
SGCA-201ENST00000262018 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.43■□□□□ 0.54
SGCA-201ENST00000262018 ARHGAP27Q6ZUM4 889 aa18.43■□□□□ 0.54
SGCA-201ENST00000262018 BCS1LQ9Y276 419 aa18.43■□□□□ 0.54
SGCA-201ENST00000262018 TMC1Q8TDI8 760 aa18.42■□□□□ 0.54
SGCA-201ENST00000262018 ROCK2O75116 1388 aaKnown RBP18.42■□□□□ 0.54
SGCA-201ENST00000262018 FSTL1Q12841 308 aa18.41■□□□□ 0.54
SGCA-201ENST00000262018 HDGFL2Q7Z4V5 671 aaPredicted RBP18.41■□□□□ 0.54
SGCA-201ENST00000262018 TAF1LQ8IZX4 1826 aa18.41■□□□□ 0.54
SGCA-201ENST00000262018 C4BP0C0L5 1744 aa18.4■□□□□ 0.54
SGCA-201ENST00000262018 MPRIPQ6WCQ1 1025 aa18.4■□□□□ 0.54
SGCA-201ENST00000262018 CD163L1Q9NR16 1453 aa18.4■□□□□ 0.54
SGCA-201ENST00000262018 NSD3Q9BZ95 1437 aa18.39■□□□□ 0.53
SGCA-201ENST00000262018 HOXC9P31274 260 aa18.39■□□□□ 0.53
SGCA-201ENST00000262018 AMPHP49418 695 aa18.39■□□□□ 0.53
SGCA-201ENST00000262018 TOGARAM1Q9Y4F4 1720 aa18.38■□□□□ 0.53
SGCA-201ENST00000262018 PXDNLA1KZ92 1463 aa18.38■□□□□ 0.53
SGCA-201ENST00000262018 EDC4Q6P2E9 1401 aaKnown RBP18.38■□□□□ 0.53
SGCA-201ENST00000262018 A0A0G2JLW4 131 aa18.38■□□□□ 0.53
SGCA-201ENST00000262018 SSFA2P28290 1259 aa18.38■□□□□ 0.53
SGCA-201ENST00000262018 EIF4G2P78344 907 aaKnown RBP eCLIP18.38■□□□□ 0.53
SGCA-201ENST00000262018 MAP3K19Q56UN5 1328 aa18.37■□□□□ 0.53
SGCA-201ENST00000262018 MMP10P09238 476 aa18.37■□□□□ 0.53
SGCA-201ENST00000262018 HSPA5P11021 654 aaKnown RBP18.37■□□□□ 0.53
SGCA-201ENST00000262018 C9orf131Q5VYM1 1079 aa18.37■□□□□ 0.53
SGCA-201ENST00000262018 USHBP1Q8N6Y0 703 aa18.37■□□□□ 0.53
SGCA-201ENST00000262018 RAPGEF4Q8WZA2 1011 aa18.37■□□□□ 0.53
SGCA-201ENST00000262018 SMARCC1Q92922 1105 aaPredicted RBP18.37■□□□□ 0.53
SGCA-201ENST00000262018 SLC12A5Q9H2X9 1139 aa18.37■□□□□ 0.53
SGCA-201ENST00000262018 RGPD2P0DJD1 1756 aa18.37■□□□□ 0.53
SGCA-201ENST00000262018 UBR3Q6ZT12 1888 aa18.36■□□□□ 0.53
SGCA-201ENST00000262018 CGNL1Q0VF96 1302 aa18.36■□□□□ 0.53
SGCA-201ENST00000262018 FCHSD2O94868 740 aa18.35■□□□□ 0.53
SGCA-201ENST00000262018 HSPA1AP0DMV8 641 aaKnown RBP18.35■□□□□ 0.53
SGCA-201ENST00000262018 HSPA1BP0DMV9 641 aaKnown RBP18.35■□□□□ 0.53
SGCA-201ENST00000262018 FBLN1P23142 703 aa18.35■□□□□ 0.53
SGCA-201ENST00000262018 TGFB2P61812 414 aa18.35■□□□□ 0.53
SGCA-201ENST00000262018 NBPF6Q5VWK0 638 aa18.35■□□□□ 0.53
SGCA-201ENST00000262018 NBPF4Q96M43 638 aa18.35■□□□□ 0.53
SGCA-201ENST00000262018 TATP17735 454 aaPredicted RBP18.34■□□□□ 0.53
SGCA-201ENST00000262018 CARD11Q9BXL7 1154 aa18.34■□□□□ 0.53
SGCA-201ENST00000262018 TERF2IPQ9NYB0 399 aa18.34■□□□□ 0.53
SGCA-201ENST00000262018 N4BP2Q86UW6 1770 aaPredicted RBP18.34■□□□□ 0.53
SGCA-201ENST00000262018 PLEKHG2Q9H7P9 1386 aa18.34■□□□□ 0.53
SGCA-201ENST00000262018 LINC00116Q8NCU8 138 aa18.33■□□□□ 0.53
SGCA-201ENST00000262018 RRAGCQ9HB90 399 aa18.33■□□□□ 0.53
SGCA-201ENST00000262018 KDM2BQ8NHM5 1336 aa18.33■□□□□ 0.52
SGCA-201ENST00000262018 PCDH11XQ9BZA7 1347 aa18.33■□□□□ 0.52
SGCA-201ENST00000262018 PCDH11YQ9BZA8 1340 aa18.33■□□□□ 0.52
SGCA-201ENST00000262018 GNPATO15228 680 aa18.32■□□□□ 0.52
SGCA-201ENST00000262018 DPEP1P16444 411 aa18.32■□□□□ 0.52
SGCA-201ENST00000262018 COG3Q96JB2 828 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms