RNA–Protein interactions for RNA: ENST00000251775.8

SNX4-201, Transcript of sorting nexin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX4, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-201ENST00000251775 NUCB1Q02818 461 aa23.56■■□□□ 1.36
SNX4-201ENST00000251775 TRIM44Q96DX7 344 aaPredicted RBP23.55■■□□□ 1.36
SNX4-201ENST00000251775 GBP4Q96PP9 640 aa23.55■■□□□ 1.36
SNX4-201ENST00000251775 ABCC4O15439 1325 aa23.55■■□□□ 1.36
SNX4-201ENST00000251775 VSIG10Q8N0Z9 540 aa23.55■■□□□ 1.36
SNX4-201ENST00000251775 C1orf115Q9H7X2 142 aa23.54■■□□□ 1.36
SNX4-201ENST00000251775 HSP90AB1P08238 724 aaKnown RBP23.54■■□□□ 1.36
SNX4-201ENST00000251775 LNPKQ9C0E8 428 aa23.54■■□□□ 1.36
SNX4-201ENST00000251775 HSP90AB2PQ58FF8 381 aa23.53■■□□□ 1.36
SNX4-201ENST00000251775 SKOR2Q2VWA4 1001 aaPredicted RBP23.53■■□□□ 1.36
SNX4-201ENST00000251775 RGPD1P0DJD0 1748 aa23.52■■□□□ 1.36
SNX4-201ENST00000251775 SSH2Q76I76 1423 aa23.52■■□□□ 1.36
SNX4-201ENST00000251775 KIF2CQ99661 725 aa23.52■■□□□ 1.36
SNX4-201ENST00000251775 AMOTL2Q9Y2J4 779 aa23.52■■□□□ 1.36
SNX4-201ENST00000251775 CHD1LQ86WJ1 897 aa23.52■■□□□ 1.35
SNX4-201ENST00000251775 EID1Q9Y6B2 187 aa23.52■■□□□ 1.35
SNX4-201ENST00000251775 USP31Q70CQ4 1352 aa23.51■■□□□ 1.35
SNX4-201ENST00000251775 RGPD8O14715 1765 aaPredicted RBP23.5■■□□□ 1.35
SNX4-201ENST00000251775 ZMYND15Q9H091 742 aa23.5■■□□□ 1.35
SNX4-201ENST00000251775 CHMP4BQ9H444 224 aaKnown RBP23.5■■□□□ 1.35
SNX4-201ENST00000251775 SOX12O15370 315 aa23.5■■□□□ 1.35
SNX4-201ENST00000251775 PLPPR3Q6T4P5 718 aa23.5■■□□□ 1.35
SNX4-201ENST00000251775 SLIT1O75093 1534 aa23.49■■□□□ 1.35
SNX4-201ENST00000251775 ARHGAP23Q9P227 1491 aa23.49■■□□□ 1.35
SNX4-201ENST00000251775 CD2BP2O95400 341 aaKnown RBP23.49■■□□□ 1.35
SNX4-201ENST00000251775 SIRT2Q8IXJ6 389 aa23.49■■□□□ 1.35
SNX4-201ENST00000251775 PTMSP20962 102 aa23.48■■□□□ 1.35
SNX4-201ENST00000251775 API5Q9BZZ5 524 aaKnown RBP23.48■■□□□ 1.35
SNX4-201ENST00000251775 KRT24Q2M2I5 525 aa23.48■■□□□ 1.35
SNX4-201ENST00000251775 MCM10Q7L590 875 aa23.48■■□□□ 1.35
SNX4-201ENST00000251775 BMP2KLQ5H9B9 411 aa23.47■■□□□ 1.35
SNX4-201ENST00000251775 ANKRD45Q5TZF3 282 aa23.47■■□□□ 1.35
SNX4-201ENST00000251775 GCC1Q96CN9 775 aa23.47■■□□□ 1.35
SNX4-201ENST00000251775 TBX22Q9Y458 520 aa23.47■■□□□ 1.35
SNX4-201ENST00000251775 FMN2Q9NZ56 1722 aa23.46■■□□□ 1.35
SNX4-201ENST00000251775 CHL1O00533 1208 aa23.46■■□□□ 1.35
SNX4-201ENST00000251775 FOXD4L1Q9NU39 408 aa23.46■■□□□ 1.35
SNX4-201ENST00000251775 TPM2P07951 284 aa23.45■■□□□ 1.34
SNX4-201ENST00000251775 MAP3K19Q56UN5 1328 aa23.44■■□□□ 1.34
SNX4-201ENST00000251775 DIP2AQ14689 1571 aa23.44■■□□□ 1.34
SNX4-201ENST00000251775 K7ELQ4 463 aaPredicted RBP23.43■■□□□ 1.34
SNX4-201ENST00000251775 TTC21AQ8NDW8 1320 aa23.43■■□□□ 1.34
SNX4-201ENST00000251775 PPP1R9BQ96SB3 815 aa23.43■■□□□ 1.34
SNX4-201ENST00000251775 CCDC173Q0VFZ6 552 aa23.43■■□□□ 1.34
SNX4-201ENST00000251775 FER1L4A9Z1Z3 1794 aa23.43■■□□□ 1.34
SNX4-201ENST00000251775 RIMS1Q86UR5 1692 aaKnown RBP23.42■■□□□ 1.34
SNX4-201ENST00000251775 SSFA2P28290 1259 aa23.41■■□□□ 1.34
SNX4-201ENST00000251775 NGDNQ8NEJ9 315 aaKnown RBP23.4■■□□□ 1.34
SNX4-201ENST00000251775 RBM42Q9BTD8 480 aaKnown RBP23.4■■□□□ 1.34
SNX4-201ENST00000251775 ARHGEF10O15013 1369 aa23.4■■□□□ 1.34
SNX4-201ENST00000251775 KIF24Q5T7B8 1368 aa23.4■■□□□ 1.34
SNX4-201ENST00000251775 NASPP49321 788 aaPredicted RBP23.4■■□□□ 1.34
SNX4-201ENST00000251775 CLEC17AQ6ZS10 378 aa23.4■■□□□ 1.34
SNX4-201ENST00000251775 RGS12O14924 1447 aa23.4■■□□□ 1.34
SNX4-201ENST00000251775 CRB1P82279 1406 aa23.4■■□□□ 1.34
SNX4-201ENST00000251775 GAS2L2Q8NHY3 880 aa23.39■■□□□ 1.34
SNX4-201ENST00000251775 KIAA0232Q92628 1395 aa23.39■■□□□ 1.34
SNX4-201ENST00000251775 FOXO3O43524 673 aa23.39■■□□□ 1.33
SNX4-201ENST00000251775 INTS3Q68E01 1043 aaKnown RBP23.39■■□□□ 1.33
SNX4-201ENST00000251775 PIK3C2AO00443 1686 aa23.39■■□□□ 1.33
SNX4-201ENST00000251775 TBC1D9Q6ZT07 1266 aa23.38■■□□□ 1.33
SNX4-201ENST00000251775 SBNO1A3KN83 1393 aa23.38■■□□□ 1.33
SNX4-201ENST00000251775 IBTKQ9P2D0 1353 aaPredicted RBP23.38■■□□□ 1.33
SNX4-201ENST00000251775 KIAA1211Q6ZU35 1233 aa23.38■■□□□ 1.33
SNX4-201ENST00000251775 XRN1Q8IZH2 1706 aaKnown RBP23.38■■□□□ 1.33
SNX4-201ENST00000251775 MTHFSDQ2M296 383 aaKnown RBP23.37■■□□□ 1.33
SNX4-201ENST00000251775 ZSCAN30Q86W11 494 aa23.37■■□□□ 1.33
SNX4-201ENST00000251775 THEMISQ8N1K5 641 aaPredicted RBP23.37■■□□□ 1.33
SNX4-201ENST00000251775 FLT4P35916 1363 aa23.37■■□□□ 1.33
SNX4-201ENST00000251775 KLHL40Q2TBA0 621 aa23.37■■□□□ 1.33
SNX4-201ENST00000251775 HAP1P54257 671 aaPredicted RBP23.36■■□□□ 1.33
SNX4-201ENST00000251775 MIS18AQ9NYP9 233 aa23.36■■□□□ 1.33
SNX4-201ENST00000251775 GOLGA6L22H0YM25 854 aa23.35■■□□□ 1.33
SNX4-201ENST00000251775 BAG4O95429 457 aaKnown RBP23.35■■□□□ 1.33
SNX4-201ENST00000251775 CEP170BQ9Y4F5 1589 aaPredicted RBP23.35■■□□□ 1.33
SNX4-201ENST00000251775 EYA1Q99502 592 aa23.34■■□□□ 1.33
SNX4-201ENST00000251775 DDX49Q9Y6V7 483 aaKnown RBP23.34■■□□□ 1.33
SNX4-201ENST00000251775 KDRP35968 1356 aa23.34■■□□□ 1.33
SNX4-201ENST00000251775 AMPHP49418 695 aa23.33■■□□□ 1.33
SNX4-201ENST00000251775 PDCL3Q9H2J4 239 aa23.33■■□□□ 1.33
SNX4-201ENST00000251775 OFD1O75665 1012 aa23.32■■□□□ 1.32
SNX4-201ENST00000251775 DCTPP1Q9H773 170 aa23.32■■□□□ 1.32
SNX4-201ENST00000251775 ATP10DQ9P241 1426 aa23.32■■□□□ 1.32
SNX4-201ENST00000251775 MARF1Q9Y4F3 1742 aaKnown RBP23.32■■□□□ 1.32
SNX4-201ENST00000251775 KCNA6P17658 529 aa23.32■■□□□ 1.32
SNX4-201ENST00000251775 IGSF1Q8N6C5 1336 aa23.32■■□□□ 1.32
SNX4-201ENST00000251775 NLRP6P59044 892 aa23.31■■□□□ 1.32
SNX4-201ENST00000251775 ANP32BQ92688 251 aaKnown RBP23.31■■□□□ 1.32
SNX4-201ENST00000251775 PTPRCP08575 1304 aa23.31■■□□□ 1.32
SNX4-201ENST00000251775 AK9Q5TCS8 1911 aa23.3■■□□□ 1.32
SNX4-201ENST00000251775 MSH6P52701 1360 aa23.3■■□□□ 1.32
SNX4-201ENST00000251775 RTF1Q92541 710 aaKnown RBP23.3■■□□□ 1.32
SNX4-201ENST00000251775 ANKRD44Q8N8A2 993 aa23.3■■□□□ 1.32
SNX4-201ENST00000251775 SLC4A2P04920 1241 aa23.29■■□□□ 1.32
SNX4-201ENST00000251775 ZNF445P59923 1031 aa23.29■■□□□ 1.32
SNX4-201ENST00000251775 ANKARQ7Z5J8 1434 aa23.29■■□□□ 1.32
SNX4-201ENST00000251775 NUTM2GQ5VZR2 741 aa23.29■■□□□ 1.32
SNX4-201ENST00000251775 TSPYL4Q9UJ04 414 aa23.29■■□□□ 1.32
SNX4-201ENST00000251775 MSNP26038 577 aaKnown RBP23.28■■□□□ 1.32
SNX4-201ENST00000251775 PLEKHM2Q8IWE5 1019 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms