RNA–Protein interactions for RNA: ENST00000248948.3

VPREB3-201, Transcript of V-set pre-B cell surrogate light chain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPREB3, Length 610 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPREB3-201ENST00000248948 BCL11BQ9C0K0 894 aaPredicted RBP17.41■□□□□ 0.38
VPREB3-201ENST00000248948 APBA3O96018 575 aa17.4■□□□□ 0.38
VPREB3-201ENST00000248948 EN1Q05925 392 aaPredicted RBP17.4■□□□□ 0.38
VPREB3-201ENST00000248948 USHBP1Q8N6Y0 703 aa17.4■□□□□ 0.38
VPREB3-201ENST00000248948 LY75O60449 1722 aa17.4■□□□□ 0.38
VPREB3-201ENST00000248948 ITGB4P16144 1822 aa17.4■□□□□ 0.38
VPREB3-201ENST00000248948 KAT6BQ8WYB5 2073 aa17.4■□□□□ 0.38
VPREB3-201ENST00000248948 TATP17735 454 aaPredicted RBP17.39■□□□□ 0.37
VPREB3-201ENST00000248948 EIF4A2Q14240 407 aaKnown RBP17.39■□□□□ 0.37
VPREB3-201ENST00000248948 IGSF1Q8N6C5 1336 aa17.39■□□□□ 0.37
VPREB3-201ENST00000248948 PCDH11XQ9BZA7 1347 aa17.39■□□□□ 0.37
VPREB3-201ENST00000248948 PCDH11YQ9BZA8 1340 aa17.39■□□□□ 0.37
VPREB3-201ENST00000248948 CAMKK2Q96RR4 588 aa17.38■□□□□ 0.37
VPREB3-201ENST00000248948 LRP5O75197 1615 aa17.38■□□□□ 0.37
VPREB3-201ENST00000248948 PAPPAQ13219 1627 aa17.38■□□□□ 0.37
VPREB3-201ENST00000248948 COL3A1P02461 1466 aaPredicted RBP17.37■□□□□ 0.37
VPREB3-201ENST00000248948 ZCRB1Q8TBF4 217 aaKnown RBP17.37■□□□□ 0.37
VPREB3-201ENST00000248948 PLSCR1O15162 318 aa17.36■□□□□ 0.37
VPREB3-201ENST00000248948 EZH2Q15910 746 aaKnown RBP17.36■□□□□ 0.37
VPREB3-201ENST00000248948 EYA1Q99502 592 aa17.36■□□□□ 0.37
VPREB3-201ENST00000248948 CC2D1BQ5T0F9 858 aaKnown RBP17.35■□□□□ 0.37
VPREB3-201ENST00000248948 KDRP35968 1356 aa17.35■□□□□ 0.37
VPREB3-201ENST00000248948 VIRMAQ69YN4 1812 aaKnown RBP17.35■□□□□ 0.37
VPREB3-201ENST00000248948 ZEB1P37275 1124 aaPredicted RBP17.34■□□□□ 0.37
VPREB3-201ENST00000248948 QSER1Q2KHR3 1735 aa17.34■□□□□ 0.37
VPREB3-201ENST00000248948 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.34■□□□□ 0.37
VPREB3-201ENST00000248948 DDX54Q8TDD1 881 aaKnown RBP17.33■□□□□ 0.36
VPREB3-201ENST00000248948 PTF1AQ7RTS3 328 aa17.32■□□□□ 0.36
VPREB3-201ENST00000248948 CASZ1Q86V15 1759 aa17.32■□□□□ 0.36
VPREB3-201ENST00000248948 SPG7Q9UQ90 795 aa17.31■□□□□ 0.36
VPREB3-201ENST00000248948 C5P01031 1676 aa17.3■□□□□ 0.36
VPREB3-201ENST00000248948 KCNQ2O43526 872 aa17.3■□□□□ 0.36
VPREB3-201ENST00000248948 MTHFSP49914 203 aa17.3■□□□□ 0.36
VPREB3-201ENST00000248948 ACSBG1Q96GR2 724 aa17.3■□□□□ 0.36
VPREB3-201ENST00000248948 SCN11AQ9UI33 1791 aa17.3■□□□□ 0.36
VPREB3-201ENST00000248948 TAF1LQ8IZX4 1826 aa17.29■□□□□ 0.36
VPREB3-201ENST00000248948 IL13P35225 146 aa17.29■□□□□ 0.36
VPREB3-201ENST00000248948 CYP27B1O15528 508 aa17.28■□□□□ 0.36
VPREB3-201ENST00000248948 TUBGCP6Q96RT7 1819 aa17.28■□□□□ 0.36
VPREB3-201ENST00000248948 ADAMTS7Q9UKP4 1686 aa17.27■□□□□ 0.36
VPREB3-201ENST00000248948 NKX1-1Q15270 411 aaPredicted RBP17.26■□□□□ 0.35
VPREB3-201ENST00000248948 NBPF14Q5TI25 921 aa17.26■□□□□ 0.35
VPREB3-201ENST00000248948 ZNF831Q5JPB2 1677 aa17.26■□□□□ 0.35
VPREB3-201ENST00000248948 TXNRD1Q16881 649 aa17.25■□□□□ 0.35
VPREB3-201ENST00000248948 DIAPH1O60610 1272 aaKnown RBP17.24■□□□□ 0.35
VPREB3-201ENST00000248948 PHKG2P15735 406 aa17.24■□□□□ 0.35
VPREB3-201ENST00000248948 PRIM1P49642 420 aaKnown RBP17.24■□□□□ 0.35
VPREB3-201ENST00000248948 AMOTQ4VCS5 1084 aa17.24■□□□□ 0.35
VPREB3-201ENST00000248948 SULT6B1Q6IMI4 303 aa17.24■□□□□ 0.35
VPREB3-201ENST00000248948 AEBP1Q8IUX7 1158 aa17.24■□□□□ 0.35
VPREB3-201ENST00000248948 IFNL2Q8IZJ0 200 aa17.24■□□□□ 0.35
VPREB3-201ENST00000248948 SYTL4Q96C24 671 aaPredicted RBP17.24■□□□□ 0.35
VPREB3-201ENST00000248948 CICQ96RK0 1608 aaPredicted RBP17.23■□□□□ 0.35
VPREB3-201ENST00000248948 PSDA5PKW4 1024 aaPredicted RBP17.22■□□□□ 0.35
VPREB3-201ENST00000248948 R3HDM1Q15032 1099 aaKnown RBP17.22■□□□□ 0.35
VPREB3-201ENST00000248948 PLEKHO1Q53GL0 409 aaPredicted RBP17.22■□□□□ 0.35
VPREB3-201ENST00000248948 SLC27A3Q5K4L6 730 aa17.22■□□□□ 0.35
VPREB3-201ENST00000248948 PROM2Q8N271 834 aa17.22■□□□□ 0.35
VPREB3-201ENST00000248948 CFAP53Q96M91 514 aa17.22■□□□□ 0.35
VPREB3-201ENST00000248948 MRC1P22897 1456 aa17.22■□□□□ 0.35
VPREB3-201ENST00000248948 KDM6AO15550 1401 aaPredicted RBP17.21■□□□□ 0.35
VPREB3-201ENST00000248948 HSP90AB1P08238 724 aaKnown RBP17.21■□□□□ 0.35
VPREB3-201ENST00000248948 PPP2R1AP30153 589 aa17.21■□□□□ 0.35
VPREB3-201ENST00000248948 CNGB1Q14028 1251 aaPredicted RBP17.21■□□□□ 0.35
VPREB3-201ENST00000248948 ANO8Q9HCE9 1232 aaPredicted RBP17.21■□□□□ 0.35
VPREB3-201ENST00000248948 SRCAPQ6ZRS2 3230 aa17.21■□□□□ 0.35
VPREB3-201ENST00000248948 C4BP0C0L5 1744 aa17.19■□□□□ 0.34
VPREB3-201ENST00000248948 COL5A3P25940 1745 aaPredicted RBP17.19■□□□□ 0.34
VPREB3-201ENST00000248948 COL24A1Q17RW2 1714 aa17.19■□□□□ 0.34
VPREB3-201ENST00000248948 PALLDQ8WX93 1383 aa17.19■□□□□ 0.34
VPREB3-201ENST00000248948 ZNF530Q6P9A1 599 aaPredicted RBP17.19■□□□□ 0.34
VPREB3-201ENST00000248948 SIPA1L3O60292 1781 aaPredicted RBP17.18■□□□□ 0.34
VPREB3-201ENST00000248948 DCAF5Q96JK2 942 aa17.18■□□□□ 0.34
VPREB3-201ENST00000248948 STK32BQ9NY57 414 aa17.18■□□□□ 0.34
VPREB3-201ENST00000248948 C1orf141Q5JVX7 400 aa17.17■□□□□ 0.34
VPREB3-201ENST00000248948 UBR3Q6ZT12 1888 aa17.16■□□□□ 0.34
VPREB3-201ENST00000248948 UBR2Q8IWV8 1755 aa17.16■□□□□ 0.34
VPREB3-201ENST00000248948 HMOX1P09601 288 aa17.16■□□□□ 0.34
VPREB3-201ENST00000248948 HMGB2P26583 209 aaKnown RBP17.16■□□□□ 0.34
VPREB3-201ENST00000248948 MPRIPQ6WCQ1 1025 aa17.16■□□□□ 0.34
VPREB3-201ENST00000248948 SMARCC1Q92922 1105 aaPredicted RBP17.16■□□□□ 0.34
VPREB3-201ENST00000248948 TMOD3Q9NYL9 352 aa17.16■□□□□ 0.34
VPREB3-201ENST00000248948 ERVV-2B6SEH9 535 aa17.15■□□□□ 0.34
VPREB3-201ENST00000248948 SLC15A2Q16348 729 aa17.15■□□□□ 0.34
VPREB3-201ENST00000248948 LRRC4BQ9NT99 713 aa17.15■□□□□ 0.34
VPREB3-201ENST00000248948 U2SURPO15042 1029 aaKnown RBP17.14■□□□□ 0.33
VPREB3-201ENST00000248948 RALBP1Q15311 655 aa17.14■□□□□ 0.33
VPREB3-201ENST00000248948 PIGBQ92521 554 aa17.14■□□□□ 0.33
VPREB3-201ENST00000248948 CCNL1Q9UK58 526 aaPredicted RBP17.14■□□□□ 0.33
VPREB3-201ENST00000248948 NUDCQ9Y266 331 aa17.14■□□□□ 0.33
VPREB3-201ENST00000248948 TJP1Q07157 1748 aa17.13■□□□□ 0.33
VPREB3-201ENST00000248948 DDX10Q13206 875 aaKnown RBP17.13■□□□□ 0.33
VPREB3-201ENST00000248948 AKAP4Q5JQC9 854 aa17.13■□□□□ 0.33
VPREB3-201ENST00000248948 DLG5Q8TDM6 1919 aa17.13■□□□□ 0.33
VPREB3-201ENST00000248948 ZNF827Q17R98 1081 aa17.11■□□□□ 0.33
VPREB3-201ENST00000248948 AKT1S1Q96B36 256 aa17.11■□□□□ 0.33
VPREB3-201ENST00000248948 MAP3K5Q99683 1374 aa17.11■□□□□ 0.33
VPREB3-201ENST00000248948 RSPH6AQ9H0K4 717 aa17.1■□□□□ 0.33
VPREB3-201ENST00000248948 MTHFSDQ2M296 383 aaKnown RBP17.09■□□□□ 0.33
VPREB3-201ENST00000248948 GAS2L2Q8NHY3 880 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms