RNA–Protein interactions for RNA: ENST00000046640.7

CTNS-201, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNS, Length 2,866 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-201ENST00000046640 SLC4A10Q6U841 1118 aa16.43■□□□□ 0.22
CTNS-201ENST00000046640 USHBP1Q8N6Y0 703 aa16.43■□□□□ 0.22
CTNS-201ENST00000046640 TSPYL4Q9UJ04 414 aa16.42■□□□□ 0.22
CTNS-201ENST00000046640 F6X3S4 739 aa16.41■□□□□ 0.22
CTNS-201ENST00000046640 C16orf71Q8IYS4 520 aaPredicted RBP16.41■□□□□ 0.22
CTNS-201ENST00000046640 PTCH1Q13635 1447 aa16.41■□□□□ 0.22
CTNS-201ENST00000046640 G2E3Q7L622 706 aa16.4■□□□□ 0.22
CTNS-201ENST00000046640 UBE2Q2Q8WVN8 375 aa16.4■□□□□ 0.22
CTNS-201ENST00000046640 PEAK1Q9H792 1746 aa16.4■□□□□ 0.22
CTNS-201ENST00000046640 FOXD4L1Q9NU39 408 aa16.4■□□□□ 0.22
CTNS-201ENST00000046640 GCC1Q96CN9 775 aa16.39■□□□□ 0.21
CTNS-201ENST00000046640 RGPD8O14715 1765 aaPredicted RBP16.38■□□□□ 0.21
CTNS-201ENST00000046640 USP31Q70CQ4 1352 aa16.38■□□□□ 0.21
CTNS-201ENST00000046640 MEIS3Q99687 375 aa16.38■□□□□ 0.21
CTNS-201ENST00000046640 PIK3R4Q99570 1358 aa16.38■□□□□ 0.21
CTNS-201ENST00000046640 TTC21AQ8NDW8 1320 aa16.38■□□□□ 0.21
CTNS-201ENST00000046640 SMARCA5O60264 1052 aaPredicted RBP16.38■□□□□ 0.21
CTNS-201ENST00000046640 XPCQ01831 940 aaPredicted RBP16.38■□□□□ 0.21
CTNS-201ENST00000046640 PANK2Q9BZ23 570 aa16.38■□□□□ 0.21
CTNS-201ENST00000046640 FLT4P35916 1363 aa16.38■□□□□ 0.21
CTNS-201ENST00000046640 CHMP4BQ9H444 224 aaKnown RBP16.37■□□□□ 0.21
CTNS-201ENST00000046640 SSH2Q76I76 1423 aa16.37■□□□□ 0.21
CTNS-201ENST00000046640 RIMS1Q86UR5 1692 aaKnown RBP16.37■□□□□ 0.21
CTNS-201ENST00000046640 OTUD7AQ8TE49 926 aaPredicted RBP16.36■□□□□ 0.21
CTNS-201ENST00000046640 MCM4P33991 863 aa16.36■□□□□ 0.21
CTNS-201ENST00000046640 RRAGDQ9NQL2 400 aaPredicted RBP16.36■□□□□ 0.21
CTNS-201ENST00000046640 HOXC9P31274 260 aa16.36■□□□□ 0.21
CTNS-201ENST00000046640 SBNO1A3KN83 1393 aa16.35■□□□□ 0.21
CTNS-201ENST00000046640 FAM43AQ8N2R8 423 aa16.35■□□□□ 0.21
CTNS-201ENST00000046640 NRKQ7Z2Y5 1582 aa16.35■□□□□ 0.21
CTNS-201ENST00000046640 LMOD2Q6P5Q4 547 aa16.35■□□□□ 0.21
CTNS-201ENST00000046640 MSH6P52701 1360 aa16.35■□□□□ 0.21
CTNS-201ENST00000046640 DIP2AQ14689 1571 aa16.35■□□□□ 0.21
CTNS-201ENST00000046640 ESCO1Q5FWF5 840 aa16.34■□□□□ 0.21
CTNS-201ENST00000046640 INTS3Q68E01 1043 aaKnown RBP16.34■□□□□ 0.21
CTNS-201ENST00000046640 CRB1P82279 1406 aa16.34■□□□□ 0.21
CTNS-201ENST00000046640 CEP170BQ9Y4F5 1589 aaPredicted RBP16.34■□□□□ 0.21
CTNS-201ENST00000046640 GOLGA6L3A6NEY3 463 aa16.34■□□□□ 0.21
CTNS-201ENST00000046640 XRCC6P12956 609 aaKnown RBP eCLIP16.34■□□□□ 0.21
CTNS-201ENST00000046640 BMP2KLQ5H9B9 411 aa16.34■□□□□ 0.21
CTNS-201ENST00000046640 TBC1D9Q6ZT07 1266 aa16.34■□□□□ 0.21
CTNS-201ENST00000046640 HSCBQ8IWL3 235 aa16.34■□□□□ 0.21
CTNS-201ENST00000046640 TOPAZ1Q8N9V7 1692 aa16.33■□□□□ 0.21
CTNS-201ENST00000046640 ARHGAP23Q9P227 1491 aa16.33■□□□□ 0.2
CTNS-201ENST00000046640 L1TD1Q5T7N2 865 aaKnown RBP16.33■□□□□ 0.2
CTNS-201ENST00000046640 TRAK2O60296 914 aa16.32■□□□□ 0.2
CTNS-201ENST00000046640 RBM42Q9BTD8 480 aaKnown RBP16.32■□□□□ 0.2
CTNS-201ENST00000046640 IGSF1Q8N6C5 1336 aa16.32■□□□□ 0.2
CTNS-201ENST00000046640 SLIT1O75093 1534 aa16.32■□□□□ 0.2
CTNS-201ENST00000046640 CEP85Q6P2H3 762 aa16.32■□□□□ 0.2
CTNS-201ENST00000046640 PHF8Q9UPP1 1060 aa16.32■□□□□ 0.2
CTNS-201ENST00000046640 ARHGEF10O15013 1369 aa16.32■□□□□ 0.2
CTNS-201ENST00000046640 GSPT1P15170 499 aaKnown RBP16.32■□□□□ 0.2
CTNS-201ENST00000046640 GAS2L2Q8NHY3 880 aa16.32■□□□□ 0.2
CTNS-201ENST00000046640 CHMP5Q9NZZ3 219 aa16.32■□□□□ 0.2
CTNS-201ENST00000046640 GNAT3A8MTJ3 354 aa16.31■□□□□ 0.2
CTNS-201ENST00000046640 PLEKHM2Q8IWE5 1019 aa16.31■□□□□ 0.2
CTNS-201ENST00000046640 IL17REQ8NFR9 667 aa16.31■□□□□ 0.2
CTNS-201ENST00000046640 DCTPP1Q9H773 170 aa16.31■□□□□ 0.2
CTNS-201ENST00000046640 RGS12O14924 1447 aa16.31■□□□□ 0.2
CTNS-201ENST00000046640 PSME1Q06323 249 aa16.31■□□□□ 0.2
CTNS-201ENST00000046640 SETD1BQ9UPS6 1966 aaKnown RBP16.3■□□□□ 0.2
CTNS-201ENST00000046640 FER1L4A9Z1Z3 1794 aa16.3■□□□□ 0.2
CTNS-201ENST00000046640 HAP1P54257 671 aaPredicted RBP16.3■□□□□ 0.2
CTNS-201ENST00000046640 FKBP5Q13451 457 aaPredicted RBP16.3■□□□□ 0.2
CTNS-201ENST00000046640 ANKLE2Q86XL3 938 aa16.3■□□□□ 0.2
CTNS-201ENST00000046640 ANKRD44Q8N8A2 993 aa16.3■□□□□ 0.2
CTNS-201ENST00000046640 STK31Q9BXU1 1019 aa16.29■□□□□ 0.2
CTNS-201ENST00000046640 KIAA0232Q92628 1395 aa16.29■□□□□ 0.2
CTNS-201ENST00000046640 HSP90AA1P07900 732 aaKnown RBP16.29■□□□□ 0.2
CTNS-201ENST00000046640 LRRC59Q96AG4 307 aaKnown RBP16.28■□□□□ 0.2
CTNS-201ENST00000046640 RTL1A6NKG5 1358 aa16.28■□□□□ 0.2
CTNS-201ENST00000046640 PTPRCP08575 1304 aa16.28■□□□□ 0.2
CTNS-201ENST00000046640 CD2BP2O95400 341 aaKnown RBP16.28■□□□□ 0.2
CTNS-201ENST00000046640 HSP90AB1P08238 724 aaKnown RBP16.28■□□□□ 0.2
CTNS-201ENST00000046640 TSHZ3Q63HK5 1081 aa16.28■□□□□ 0.2
CTNS-201ENST00000046640 EIF2S2P20042 333 aaKnown RBP16.28■□□□□ 0.2
CTNS-201ENST00000046640 EXOC6BQ9Y2D4 811 aa16.28■□□□□ 0.2
CTNS-201ENST00000046640 KDRP35968 1356 aa16.27■□□□□ 0.2
CTNS-201ENST00000046640 NBPF6Q5VWK0 638 aa16.27■□□□□ 0.2
CTNS-201ENST00000046640 NBPF4Q96M43 638 aa16.27■□□□□ 0.2
CTNS-201ENST00000046640 ORAI2Q96SN7 254 aa16.27■□□□□ 0.2
CTNS-201ENST00000046640 PIK3C2AO00443 1686 aa16.27■□□□□ 0.19
CTNS-201ENST00000046640 RPAP2Q8IXW5 612 aaPredicted RBP16.26■□□□□ 0.19
CTNS-201ENST00000046640 RBM25P49756 843 aaKnown RBP16.26■□□□□ 0.19
CTNS-201ENST00000046640 FLIIQ13045 1269 aa16.26■□□□□ 0.19
CTNS-201ENST00000046640 LGR6Q9HBX8 967 aa16.26■□□□□ 0.19
CTNS-201ENST00000046640 ATP10DQ9P241 1426 aa16.26■□□□□ 0.19
CTNS-201ENST00000046640 NALCNQ8IZF0 1738 aa16.26■□□□□ 0.19
CTNS-201ENST00000046640 CDC45O75419 566 aa16.25■□□□□ 0.19
CTNS-201ENST00000046640 KIF2CQ99661 725 aa16.25■□□□□ 0.19
CTNS-201ENST00000046640 RGPD1P0DJD0 1748 aa16.25■□□□□ 0.19
CTNS-201ENST00000046640 PHAXQ9H814 394 aaKnown RBP16.24■□□□□ 0.19
CTNS-201ENST00000046640 TTC22Q5TAA0 569 aa16.24■□□□□ 0.19
CTNS-201ENST00000046640 ANXA1P04083 346 aa16.24■□□□□ 0.19
CTNS-201ENST00000046640 TAF7Q15545 349 aaPredicted RBP16.24■□□□□ 0.19
CTNS-201ENST00000046640 KCNQ3O43525 872 aa16.23■□□□□ 0.19
CTNS-201ENST00000046640 CCDC30Q5VVM6 783 aa16.23■□□□□ 0.19
CTNS-201ENST00000046640 NAP1L5Q96NT1 182 aaPredicted RBP16.23■□□□□ 0.19
CTNS-201ENST00000046640 SDSP20132 328 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms