RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 BCAT2O15382 392 aaPredicted RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 HOXC11O43248 304 aaPredicted RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 PAGE4O60829 102 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 SEC31AO94979 1220 aaKnown RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 NADKO95544 446 aaPredicted RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 TSHBP01222 138 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 KRT6AP02538 564 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 KRT6BP04259 564 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 G6PDP11413 515 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 CEACAM1P13688 526 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 COX7A2P14406 83 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 MYOD1P15172 320 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 CD58P19256 250 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 CNTFP26441 200 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 ABCD1P33897 745 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 DRD3P35462 400 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 DDIT3P35638 169 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 PSMC2P35998 433 aaKnown RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 UBA7P41226 1012 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 GABRB2P47870 512 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 FASLGP48023 281 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 KRT6CP48668 564 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 METAP2P50579 478 aaKnown RBP eCLIP0.43□□□□□ -2.34
VPS35-212ENST00000640313 TUBP50607 506 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 CLCNKAP51800 687 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 CDH15P55291 814 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 UFM1P61960 85 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 EEF1A1P68104 462 aaKnown RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 RPL24P83731 157 aaKnown RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 CEBPZQ03701 1054 aaKnown RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 GOLGA8FQ08AF8 430 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 TBL3Q12788 808 aaKnown RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 RAPSNQ13702 412 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 RUNX2Q13950 521 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 FGFBP1Q14512 234 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 DHX8Q14562 1220 aaKnown RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 ZNF234Q14588 700 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 ARHGEF6Q15052 776 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 TAF11Q15544 211 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 DECR1Q16698 335 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 KRT24Q2M2I5 525 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 TCTN1Q2MV58 587 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 COL28A1Q2UY09 1125 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 USP41Q3LFD5 358 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 CDONQ4KMG0 1287 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 KRTCAP3Q53RY4 240 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 TECRLQ5HYJ1 363 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 DCST1Q5T197 706 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 ADAMTSL4-AS1Q5T5F5 129 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 ANKRD45Q5TZF3 282 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 EEF1A1P5Q5VTE0 462 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 NAA35Q5VZE5 725 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 CES5AQ6NT32 575 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 KCTD18Q6PI47 426 aaPredicted RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 INO80CQ6PI98 192 aaPredicted RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 SLC22A25Q6T423 547 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 NHLRC1Q6VVB1 395 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 RAD9BQ6WBX8 426 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 TMEM64Q6YI46 380 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 KRBA2Q6ZNG9 492 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 ANO5Q75V66 913 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 DPPA4Q7L190 304 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 LRRC8DQ7L1W4 858 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 TAOK1Q7L7X3 1001 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 ADGRG6Q86SQ4 1221 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 TSPAN33Q86UF1 283 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 MARCH9Q86YJ5 346 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 TDRPQ86YL5 185 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 LURAP1LQ8IV03 231 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 KIAA2013Q8IYS2 634 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 ZNF34Q8IZ26 560 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 SPATA6LQ8N4H0 392 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 SCCPDHQ8NBX0 429 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 C11orf65Q8NCR3 313 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 RBM15BQ8NDT2 890 aaKnown RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 BEST2Q8NFU1 509 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 TNIP2Q8NFZ5 429 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 OR5R1Q8NH85 324 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 HUS1BQ8NHY5 278 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 OLIG1Q8TAK6 271 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 HMGCLL1Q8TB92 370 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 SLC44A1Q8WWI5 657 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 FCAMRQ8WWV6 532 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 STAMQ92783 540 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 IGSF8Q969P0 613 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 STAMBPL1Q96FJ0 436 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 LTV1Q96GA3 475 aaPredicted RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 ZC3HAV1LQ96H79 300 aaKnown RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 GMPPAQ96IJ6 420 aaPredicted RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 MAELQ96JY0 434 aaKnown RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 EGLN2Q96KS0 407 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 KLHL15Q96M94 604 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 BBS4Q96RK4 519 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 SIN3AQ96ST3 1273 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 ACOX2Q99424 681 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 CD180Q99467 661 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 MPHOSPH8Q99549 860 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 GFI1Q99684 422 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 STRA6Q9BX79 667 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 NUF2Q9BZD4 464 aa0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms