RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 FAM47BQ8NA70 645 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 GRIN3AQ8TCU5 1115 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 ADAMTS16Q8TE57 1224 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 TEX37Q96LM6 180 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 FAM193BQ96PV7 902 aaPredicted RBP12.67□□□□□ -0.38
LINC00540-203ENST00000631321 TTLL2Q9BWV7 592 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 TDRD1Q9BXT4 1180 aaKnown RBP12.67□□□□□ -0.38
LINC00540-203ENST00000631321 PFDN4Q9NQP4 134 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 SMOXQ9NWM0 555 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 ZIM2Q9NZV7 527 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 HSFX1Q9UBD0 423 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 TIMM22Q9Y584 194 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 ACTL7AQ9Y615 435 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 ANKRD36A6QL64 1941 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 BTN3A1O00481 513 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 RASAL1O95294 804 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 CHEK2O96017 543 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 NPPAP01160 153 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 F11P03951 625 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 UMPSP11172 480 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 COL6A1P12109 1028 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 PKMP14618 531 aaKnown RBP12.66□□□□□ -0.38
LINC00540-203ENST00000631321 PRDX3P30048 256 aaKnown RBP12.66□□□□□ -0.38
LINC00540-203ENST00000631321 OXTRP30559 389 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 AGTR2P50052 363 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 FCGRTP55899 365 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 ERVK-8P63133 956 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 SLC36A3Q495N2 470 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 TMTC4Q5T4D3 741 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 TMEM199Q8N511 208 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 PCSK9Q8NBP7 692 aaKnown RBP12.66□□□□□ -0.38
LINC00540-203ENST00000631321 TNIP2Q8NFZ5 429 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 OR56A4Q8NGH8 313 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 CDK5RAP1Q96SZ6 601 aaKnown RBP12.66□□□□□ -0.38
LINC00540-203ENST00000631321 SLC30A3Q99726 388 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 ADI1Q9BV57 179 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 GPR62Q9BZJ7 368 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 ALG2Q9H553 416 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 GALPQ9UBC7 116 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 LEF1Q9UJU2 399 aaPredicted RBP12.66□□□□□ -0.38
LINC00540-203ENST00000631321 CHD5Q8TDI0 1954 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 VPS26AO75436 327 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 SLC22A3O75751 556 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 NELFEP18615 380 aaKnown RBP12.66□□□□□ -0.38
LINC00540-203ENST00000631321 UGT1A6P19224 532 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 LPOP22079 712 aaPredicted RBP12.66□□□□□ -0.38
LINC00540-203ENST00000631321 FLT3LGP49771 235 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 CLCN4P51793 760 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 HK3P52790 923 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 OXCT1P55809 520 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 PLOD1Q02809 727 aaPredicted RBP12.66□□□□□ -0.38
LINC00540-203ENST00000631321 MERTKQ12866 999 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 PAGE3Q5JUK9 113 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 CTSL3PQ5NE16 218 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 IL31Q6EBC2 164 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 ERI1Q8IV48 349 aaKnown RBP12.66□□□□□ -0.38
LINC00540-203ENST00000631321 PIANPQ8IYJ0 282 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 TMIGD2Q96BF3 282 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 RMDN1Q96DB5 314 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 ZNF382Q96SR6 550 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 SEPT5Q99719 369 aaPredicted RBP12.66□□□□□ -0.38
LINC00540-203ENST00000631321 ARHGAP39Q9C0H5 1083 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 CD320Q9NPF0 282 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 ST14Q9Y5Y6 855 aa12.66□□□□□ -0.38
LINC00540-203ENST00000631321 A0A087WXM4 84 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 KANSL1LA0AUZ9 987 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 ILVBLA1L0T0 632 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 FAM234BA2RU67 622 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 SNX2O60749 519 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 CCND3P30281 292 aaPredicted RBP12.65□□□□□ -0.38
LINC00540-203ENST00000631321 RFC2P35250 354 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 TTPAP49638 278 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 APLP1P51693 650 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 ADARP55265 1226 aaKnown RBP12.65□□□□□ -0.38
LINC00540-203ENST00000631321 UFM1P61960 85 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 LIPEQ05469 1076 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 BIRC2Q13490 618 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 UGT3A1Q6NUS8 523 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 RSPO2Q6UXX9 243 aaPredicted RBP12.65□□□□□ -0.38
LINC00540-203ENST00000631321 RNF19BQ6ZMZ0 732 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 OR2T11Q8NH01 316 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 CD200R1Q8TD46 325 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 KCNJ9Q92806 393 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 VPS33AQ96AX1 596 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 KCTD14Q9BQ13 255 aaPredicted RBP12.65□□□□□ -0.38
LINC00540-203ENST00000631321 ZBED2Q9BTP6 218 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 HGH1Q9BTY7 390 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 SCUBE2Q9NQ36 999 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 RIC8BQ9NVN3 520 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 DDX18Q9NVP1 670 aaKnown RBP12.65□□□□□ -0.38
LINC00540-203ENST00000631321 TRMT6Q9UJA5 497 aaKnown RBP12.65□□□□□ -0.38
LINC00540-203ENST00000631321 DNMT3LQ9UJW3 386 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 PHF24Q9UPV7 400 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 COMMD10Q9Y6G5 202 aa12.65□□□□□ -0.38
LINC00540-203ENST00000631321 ZFP37Q9Y6Q3 630 aaPredicted RBP12.65□□□□□ -0.38
LINC00540-203ENST00000631321 CCDC154A6NI56 674 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 H7C0S8 307 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 E2F3O00716 465 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 PFDN6O15212 129 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 CLDN11O75508 207 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms