RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 FUBP3Q96I24 572 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 TBATAQ96M53 351 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 TSSK3Q96PN8 268 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 DGCR6LQ9BY27 220 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 TRAF6Q9Y4K3 522 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 RBM7Q9Y580 266 aaKnown RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 HDAC3O15379 428 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 IL6P05231 212 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 CCNA2P20248 432 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 TNFRSF8P28908 595 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 GALNT18Q6P9A2 607 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 FOXR2Q6PJQ5 311 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 ARHGAP36Q6ZRI8 547 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 PLD5Q8N7P1 536 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 SIDT2Q8NBJ9 832 aaKnown RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 LRRN4CLQ8ND94 238 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 TRIM8Q9BZR9 551 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 PRDM8Q9NQV8 689 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 POLR3BQ9NW08 1133 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 RCCD1A6NED2 376 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 CCL22O00626 93 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 TRIM38O00635 465 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 STK16O75716 305 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 MED26O95402 600 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 AP2A1O95782 977 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 ECT2LQ008S8 904 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 RHAGQ02094 409 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 BEND5Q7L4P6 421 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 TMC8Q8IU68 726 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 PNPT1Q8TCS8 783 aaKnown RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 EEF1AKMT1Q8WVE0 214 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 TMEM27Q9HBJ8 222 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 SAMHD1Q9Y3Z3 626 aaKnown RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 B3GALT2O43825 422 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 PFKMP08237 780 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 GJA1P17302 382 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 MAPK12P53778 367 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 BNIP2Q12982 314 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 SLC13A2Q13183 592 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 LARS2Q15031 903 aaKnown RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 ZIK1Q3SY52 487 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 KIAA0408Q6ZU52 694 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 DEPDC4Q8N2C3 294 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 BPIFB6Q8NFQ5 453 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 CYB5D2Q8WUJ1 264 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 PTCD3Q96EY7 689 aaKnown RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 MECRQ9BV79 373 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 UNC93B1Q9H1C4 597 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 MRPS30Q9NP92 439 aaKnown RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 FKBPLQ9UIM3 349 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 SORCS3Q9UPU3 1222 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 ATXN2Q99700 1313 aaKnown RBP11.29□□□□□ -0.6
CLIP1-219ENST00000620786 XKRYO14609 159 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 SIN3BO75182 1162 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 TNFP01375 233 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 BMP6P22004 513 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 ASPAP45381 313 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 MPP1Q00013 466 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 EPS8Q12929 822 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 SH3D19Q5HYK7 790 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 PROSER1Q86XN7 944 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 MMAAQ8IVH4 418 aaKnown RBP11.29□□□□□ -0.6
CLIP1-219ENST00000620786 TEFMQ96QE5 360 aaKnown RBP11.29□□□□□ -0.6
CLIP1-219ENST00000620786 SH3GL3Q99963 347 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 TRPS1Q9UHF7 1281 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 TLR6Q9Y2C9 796 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 IGKV6D-41A0A0C4DH26 115 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 MLLT3P42568 568 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-219ENST00000620786 NRG1Q02297 640 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-219ENST00000620786 GTF2H2Q13888 395 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 TAF1AQ15573 450 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-219ENST00000620786 DGUOKQ16854 277 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 PHF19Q5T6S3 580 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 TMEM164Q5U3C3 297 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 GTF2H2CQ6P1K8 395 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 ST6GALNAC4Q9H4F1 302 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 WDR26Q9H7D7 661 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 NOL11Q9H8H0 719 aaKnown RBP11.29□□□□□ -0.6
CLIP1-219ENST00000620786 PLIN4Q96Q06 1357 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 LRCH4O75427 683 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 TNFAIP8O95379 198 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 ASMTP46597 345 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 HSPA7P48741 367 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 USP46P62068 366 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 DGCR6Q14129 220 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 PEX5LQ8IYB4 626 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 ZNF567Q8N184 647 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 RBM18Q96H35 190 aaKnown RBP11.29□□□□□ -0.6
CLIP1-219ENST00000620786 PCBD2Q9H0N5 130 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 CARS2Q9HA77 564 aaKnown RBP11.29□□□□□ -0.6
CLIP1-219ENST00000620786 PCDHB11Q9Y5F2 797 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 IRS2Q9Y4H2 1338 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 ALOX15BO15296 676 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 TAS2R50P59544 299 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 RPP38P78345 283 aaKnown RBP11.29□□□□□ -0.6
CLIP1-219ENST00000620786 SEMG2Q02383 582 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 GRB14Q14449 540 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 TAF5Q15542 800 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 MBLAC2Q68D91 279 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 AHI1Q8N157 1196 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms