RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 NFATC2Q13469 925 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 PPP1R7Q15435 360 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 PCID2Q5JVF3 399 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 C6orf132Q5T0Z8 1188 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 CHST15Q7LFX5 561 aaPredicted RBP14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 C11orf96Q7Z7L8 435 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 PHYKPLQ8IUZ5 450 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 MCUQ8NE86 351 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 FAM46DQ8NEK8 389 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 DDHD1Q8NEL9 900 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 PATE1Q8WXA2 126 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 PWWP2AQ96N64 755 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 SMOXQ9NWM0 555 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 TAAR2Q9P1P5 351 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 SIRPGQ9P1W8 387 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 APPL1Q9UKG1 709 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 GPR34Q9UPC5 381 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 WASF3Q9UPY6 502 aa14.04□□□□□ -0.16
SHKBP1-217ENST00000598558 TP53BP1Q12888 1972 aaPredicted RBP14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 SCN8AQ9UQD0 1980 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 HEATR9A2RTY3 570 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 PRR19A6NJB7 356 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 DNALI1O14645 258 aaPredicted RBP14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 CDK14O94921 469 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 CKMT1AP12532 417 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 CKMT2P17540 419 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 FOXN2P32314 431 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 HADHAP40939 763 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 MAGEA3P43357 314 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 ITGA9Q13797 1035 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 SEMA3AQ14563 771 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 INAVAQ3KP66 663 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 ZRANB3Q5FWF4 1079 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 ZCCHC8Q6NZY4 707 aaKnown RBP14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 GUSBP11Q6P575 273 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 SLC30A9Q6PML9 568 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 LVRNQ6Q4G3 990 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 CRTC3Q6UUV7 619 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 XKR5Q6UX68 686 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 ZNF572Q7Z3I7 529 aaPredicted RBP14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 GKN2Q86XP6 184 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 MARCH9Q86YJ5 346 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 GALNT13Q8IUC8 556 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 KYQ8NBH2 561 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 GPR156Q8NFN8 814 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 GDAP1Q8TB36 358 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 ZNF592Q92610 1267 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 TRIM44Q96DX7 344 aaPredicted RBP14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 SERPINB12Q96P63 405 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 DUSP23Q9BVJ7 150 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 TREX1Q9NSU2 369 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 BFARQ9NZS9 450 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 GULP1Q9UBP9 304 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 ASIC3Q9UHC3 531 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 CDC23Q9UJX2 597 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 RIMKLBQ9ULI2 386 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 KCNK6Q9Y257 313 aa14.03□□□□□ -0.16
SHKBP1-217ENST00000598558 LRP4O75096 1905 aa14.02□□□□□ -0.16
SHKBP1-217ENST00000598558 RAD51CO43502 376 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 VEGFDO43915 354 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 BANF1O75531 89 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 URI1O94763 535 aaPredicted RBP14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 GOT2P00505 430 aaKnown RBP14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 ALPPL2P10696 532 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 ACP5P13686 325 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 ACP1P24666 158 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 ARNTP27540 789 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 ACTR1BP42025 376 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 ACTR1AP61163 376 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 DBN1Q16643 649 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 SKIDA1Q1XH10 827 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 PLA2G4EQ3MJ16 856 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 MSS51Q4VC12 460 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 CCDC157Q569K6 752 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 PERM1Q5SV97 790 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 LDLRAP1Q5SW96 308 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 FNBP1LQ5T0N5 605 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 IZUMO3Q5VZ72 239 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 TMEM220Q6QAJ8 160 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 DET1Q7L5Y6 550 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 SNX20Q7Z614 316 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 SERPINA9Q86WD7 417 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 C17orf82Q86X59 251 aaPredicted RBP14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 PPIL6Q8IXY8 311 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 NXPE1Q8N323 547 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 SDR16C5Q8N3Y7 309 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 CHCHD4Q8N4Q1 142 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 BEND7Q8N7W2 519 aaPredicted RBP14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 MFSD3Q96ES6 412 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 SGF29Q96ES7 293 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 SIGLEC10Q96LC7 697 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 FCRL3Q96P31 734 aaPredicted RBP14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 KIFC1Q9BW19 673 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 TRIM31Q9BZY9 425 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 RMI1Q9H9A7 625 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 MARCH4Q9P2E8 410 aaPredicted RBP14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 TBC1D29Q9UFV1 150 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 RABGEF1Q9UJ41 708 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 DOLKQ9UPQ8 538 aa14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 SLC30A1Q9Y6M5 507 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms