RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 HTR3CQ8WXA8 447 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 RAPGEF5Q92565 580 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 GLYATL1Q969I3 302 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 RTP4Q96DX8 246 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 PLEKHG4BQ96PX9 1271 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 TRABDQ9H4I3 376 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 POT1Q9NUX5 634 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 OCIAD1Q9NX40 245 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 DDX56Q9NY93 547 aaKnown RBP13.45□□□□□ -0.26
TRIM28-211ENST00000597968 INTUQ9ULD6 942 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 A0A0U1RQS6 177 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 LRRD1A4D1F6 860 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 TERTO14746 1132 aaKnown RBP13.44□□□□□ -0.26
TRIM28-211ENST00000597968 POLR1CO15160 346 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-211ENST00000597968 MTSS1O43312 755 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 AKR1B10O60218 316 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 EPOP01588 193 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 C9P02748 559 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 ACP5P13686 325 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 VCLP18206 1134 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 WT1P19544 449 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-211ENST00000597968 CCR10P46092 362 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 UBE2IP63279 158 aaKnown RBP13.44□□□□□ -0.26
TRIM28-211ENST00000597968 AP1B1Q10567 949 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 TEX44Q53QW1 395 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 ODF2Q5BJF6 829 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 ABRAXAS1Q6UWZ7 409 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 PRICKLE2Q7Z3G6 844 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 SLC35G2Q8TBE7 412 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 BRSK1Q8TDC3 778 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 NCSTNQ92542 709 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 SMIM14Q96QK8 99 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 SPATA16Q9BXB7 569 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 RAB33BQ9H082 229 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 TMEM9Q9P0T7 183 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 ATXN10Q9UBB4 475 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 IL17BQ9UHF5 180 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 HEY1Q9Y5J3 304 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 PIEZO2Q9H5I5 2752 aa13.44□□□□□ -0.26
TRIM28-211ENST00000597968 PRR19A6NJB7 356 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 C3orf70A6NLC5 250 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-211ENST00000597968 FLNBO75369 2602 aaKnown RBP13.43□□□□□ -0.26
TRIM28-211ENST00000597968 NDST3O95803 873 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 EML2O95834 649 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 RECKO95980 971 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 VIPP01282 170 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 FAM87AP0C7U9 286 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 LIFP15018 202 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 ZNF8P17098 575 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-211ENST00000597968 HMGCLP35914 325 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 PPM1FP49593 454 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-211ENST00000597968 ZBTB17Q13105 803 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 NFATC2Q13469 925 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 TFDP2Q14188 446 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 IL11RAQ14626 422 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 AGAP9Q5VTM2 703 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 ANKS6Q68DC2 871 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 TMEM26Q6ZUK4 368 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 LRRTM4Q86VH4 590 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 RHOT1Q8IXI2 618 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.43□□□□□ -0.26
TRIM28-211ENST00000597968 ESX1Q8N693 406 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 EID2BQ96D98 161 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 VAT1Q99536 393 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 PACSIN1Q9BY11 444 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 GPR63Q9BZJ6 419 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 OR2AG1Q9H205 316 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 GPN2Q9H9Y4 310 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-211ENST00000597968 KLC4Q9NSK0 619 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 EPHA6Q9UF33 1036 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 KCNK6Q9Y257 313 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 ZNF711Q9Y462 761 aa13.43□□□□□ -0.26
TRIM28-211ENST00000597968 PCYT1BQ9Y5K3 369 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-211ENST00000597968 DNMT3AQ9Y6K1 912 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-211ENST00000597968 SETXQ7Z333 2677 aaKnown RBP13.42□□□□□ -0.26
TRIM28-211ENST00000597968 A0A0A6YYK5 440 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-211ENST00000597968 KLHL33A6NCF5 533 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 UBXN7O94888 489 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 ZIC2O95409 532 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-211ENST00000597968 DLGAP3O95886 979 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 MPSTP25325 297 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 TNNT3P45378 269 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-211ENST00000597968 GALNT3Q14435 633 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 MESDQ14696 234 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 INSCQ1MX18 579 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 ADGRG6Q86SQ4 1221 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 GPR26Q8NDV2 337 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 LRRN4Q8WUT4 740 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 PMEPA1Q969W9 287 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 C9orf72Q96LT7 481 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 TEKT5Q96M29 485 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 CCDC42Q96M95 316 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 ZCCHC2Q9C0B9 1178 aaKnown RBP13.42□□□□□ -0.26
TRIM28-211ENST00000597968 GLOD4Q9HC38 313 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 SIDT1Q9NXL6 827 aaKnown RBP13.42□□□□□ -0.26
TRIM28-211ENST00000597968 HACD3Q9P035 362 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 PRKAB1Q9Y478 270 aa13.42□□□□□ -0.26
TRIM28-211ENST00000597968 SDK2Q58EX2 2172 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 TRBV23OR9-2A0A075B6M9 112 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 GOLGA6L3A6NEY3 463 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 167.5 ms