RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 TFDP3Q5H9I0 405 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 LGSNQ5TDP6 509 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 ATF7IP2Q5U623 682 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 IRAK1BP1Q5VVH5 260 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 PLA2G4FQ68DD2 849 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 DUS1LQ6P1R4 473 aaKnown RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 CRTC1Q6UUV9 634 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 B3GNT9Q6UX72 402 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 PACS1Q6VY07 963 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 Q6ZNX1 250 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 SH2D5Q6ZV89 423 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 NCCRP1Q6ZVX7 275 aaPredicted RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 TMPRSS9Q7Z410 1059 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TMEM150AQ86TG1 271 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 SETD3Q86TU7 594 aaPredicted RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 SLC26A11Q86WA9 606 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 XYLT1Q86Y38 959 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 WDR75Q8IWA0 830 aaKnown RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 TPH2Q8IWU9 490 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 DAW1Q8N136 415 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 PDIK1LQ8N165 341 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 METTL25Q8N6Q8 603 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 FBXO36Q8NEA4 188 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 ADCY4Q8NFM4 1077 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 HM13Q8TCT9 377 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 KAT5Q92993 513 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 LRRC39Q96DD0 335 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 CMTM5Q96DZ9 223 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 SLC6A18Q96N87 628 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 SLC22A12Q96S37 553 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 SRPK1Q96SB4 655 aaKnown RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 CYP2S1Q96SQ9 504 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 SERPINI1Q99574 410 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TEKT3Q9BXF9 490 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 MRPL1Q9BYD6 325 aaKnown RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 SLC2A11Q9BYW1 496 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 KLC2Q9H0B6 622 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 CCDC68Q9H2F9 335 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 SYNDIG1Q9H7V2 258 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 PLGRKTQ9HBL7 147 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 XAB2Q9HCS7 855 aaKnown RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 AASDHPPTQ9NRN7 309 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 RAB6BQ9NRW1 208 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TBC1D23Q9NUY8 699 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TUBA8Q9NY65 449 aaPredicted RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 RRN3Q9NYV6 651 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 CLIC5Q9NZA1 410 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 HACD3Q9P035 362 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 USP36Q9P275 1121 aaKnown RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 ARMCX1Q9P291 453 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 RSL24D1Q9UHA3 163 aaKnown RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 ZMYM5Q9UJ78 669 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 RIMS3Q9UJD0 308 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 VPS28Q9UK41 221 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 ADAMTS6Q9UKP5 1117 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 HCN2Q9UL51 889 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 DNPEPQ9ULA0 475 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TTLL3Q9Y4R7 772 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 TIMM13Q9Y5L4 95 aaPredicted RBP4.16□□□□□ -1.74
LIG3-211ENST00000588713 AP4B1Q9Y6B7 739 aa4.16□□□□□ -1.74
LIG3-211ENST00000588713 CSPG4Q6UVK1 2322 aa4.15□□□□□ -1.74
LIG3-211ENST00000588713 TRAV19A0A0A6YYK7 116 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 TCRBV9S1A1TA0A576 114 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 WDR91A4D1P6 747 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 CCDC160A6NGH7 325 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 ARHGAP42A6NI28 874 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 TRIM64CA6NLI5 447 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 SHISA8B8ZZ34 492 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 WASH3PC4AMC7 463 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 K7EM74 188 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 TRIM24O15164 1050 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 PRICKLE3O43900 615 aaPredicted RBP4.15□□□□□ -1.75
LIG3-211ENST00000588713 GAS7O60861 476 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 DNAJA2O60884 412 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 GLRA3O75311 464 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 H2AFYO75367 372 aaKnown RBP4.15□□□□□ -1.75
LIG3-211ENST00000588713 CNTN5O94779 1100 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 TMEM63AO94886 807 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 SLITRK3O94933 977 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 OR6B1O95007 311 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 SIX3O95343 332 aaPredicted RBP4.15□□□□□ -1.75
LIG3-211ENST00000588713 PGM3O95394 542 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 CRTAMO95727 393 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 EIF2S1P05198 315 aaKnown RBP4.15□□□□□ -1.75
LIG3-211ENST00000588713 P4HBP07237 508 aaKnown RBP4.15□□□□□ -1.75
LIG3-211ENST00000588713 BPGMP07738 259 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 SNRPAP09012 282 aaKnown RBP4.15□□□□□ -1.75
LIG3-211ENST00000588713 USP17L7P0C7H9 530 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 PRKAR1AP10644 381 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 ADH5P11766 374 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 KRT5P13647 590 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 HGFP14210 728 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 ITGAXP20702 1163 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 TGM2P21980 687 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 PRKCHP24723 683 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 CD27P26842 260 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 HMOX2P30519 316 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 SSTR1P30872 391 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 SERPINB6P35237 376 aa4.15□□□□□ -1.75
LIG3-211ENST00000588713 SOX11P35716 441 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms