RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 PGBD3Q8N328 593 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 SLC44A3Q8N4M1 653 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 DTX3LQ8TDB6 740 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 LPGAT1Q92604 370 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 VPS35Q96QK1 796 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 MRPL57Q9BQC6 102 aaKnown RBP6.14□□□□□ -1.43
LIG3-206ENST00000586058 SIKE1Q9BRV8 207 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 WRAP53Q9BUR4 548 aaKnown RBP6.14□□□□□ -1.43
LIG3-206ENST00000586058 PITPNM3Q9BZ71 974 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 RSPH9Q9H1X1 276 aaPredicted RBP6.14□□□□□ -1.43
LIG3-206ENST00000586058 ZDHHC4Q9NPG8 344 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 PRSS16Q9NQE7 514 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 SLC2A4RGQ9NR83 387 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 SMOXQ9NWM0 555 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 ZDHHC3Q9NYG2 299 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 NCKIPSDQ9NZQ3 722 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 MARCH4Q9P2E8 410 aaPredicted RBP6.14□□□□□ -1.43
LIG3-206ENST00000586058 SLC17A7Q9P2U7 560 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 COPG2Q9UBF2 871 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 XPR1Q9UBH6 696 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 PPM1HQ9ULR3 514 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 RNF112Q9ULX5 631 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 SORCS3Q9UPU3 1222 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 RUVBL2Q9Y230 463 aaKnown RBP6.14□□□□□ -1.43
LIG3-206ENST00000586058 LRP4O75096 1905 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 FANCMQ8IYD8 2048 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 NUMA1Q14980 2115 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 TRANK1O15050 2925 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 TRBV5-4A0A0C4DH59 114 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 TMEM114B3SHH9 223 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 SUPT3HB4E1H0 165 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 EIF3FO00303 357 aaPredicted RBP6.13□□□□□ -1.43
LIG3-206ENST00000586058 EBAG9O00559 213 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 SOX1O00570 391 aaPredicted RBP6.13□□□□□ -1.43
LIG3-206ENST00000586058 KLF11O14901 512 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 MID1O15344 667 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 AP1G1O43747 822 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 PLIN3O60664 434 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 TRIM13O60858 407 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 SUPT3HO75486 399 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 SLC25A14O95258 325 aaPredicted RBP6.13□□□□□ -1.43
LIG3-206ENST00000586058 TRIM16O95361 564 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 HSPA4LO95757 839 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 EGFP01133 1207 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 PROCP04070 461 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 SERPINE1P05121 402 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 BPGMP07738 259 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 GSTM1P09488 218 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 TPBGLP0DKB5 382 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 CBSLP0DN79 551 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 C6P13671 934 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 ENO3P13929 434 aaPredicted RBP6.13□□□□□ -1.43
LIG3-206ENST00000586058 GFAPP14136 432 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 TIMP2P16035 220 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 TFEBP19484 476 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 CD9P21926 228 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 CBSP35520 551 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 SERPINB5P36952 375 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 ETV3P41162 512 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 P2RY2P41231 377 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 GLRBP48167 497 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 LIG3P49916 1009 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 CCR3P51677 355 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 HK2P52789 917 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 TAS2R39P59534 338 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 XIAPP98170 497 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 IRF9Q00978 393 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 GSTM4Q03013 218 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 CNTN1Q12860 1018 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 STX3Q13277 289 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 SGCGQ13326 291 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 SEMA3AQ14563 771 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 SETDB1Q15047 1291 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 CHRNA6Q15825 494 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 TMEM52BQ4KMG9 183 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 SWT1Q5T5J6 900 aaKnown RBP6.13□□□□□ -1.43
LIG3-206ENST00000586058 LIPMQ5VYY2 423 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 KIAA1324Q6UXG2 1013 aaKnown RBP6.13□□□□□ -1.43
LIG3-206ENST00000586058 LIPIQ6XZB0 460 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 RGS9BPQ6ZS82 235 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 FAM47EQ6ZV65 393 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 ZSWIM9Q86XI8 627 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 SYNPOQ8N3V7 929 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 HDDC3Q8N4P3 179 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 TXNDC5Q8NBS9 432 aaKnown RBP6.13□□□□□ -1.43
LIG3-206ENST00000586058 CCDC197Q8NCU1 140 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 GPR26Q8NDV2 337 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 DDHD1Q8NEL9 900 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 RPLP0P6Q8NHW5 317 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 STAG3L4Q8TBR4 150 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 ZNF473Q8WTR7 871 aaKnown RBP6.13□□□□□ -1.43
LIG3-206ENST00000586058 KCTD4Q8WVF5 259 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 SKA2Q8WVK7 121 aaPredicted RBP6.13□□□□□ -1.43
LIG3-206ENST00000586058 EXT2Q93063 718 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 ARRDC3Q96B67 414 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 LINGO1Q96FE5 620 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 DTD2Q96FN9 168 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 SIPA1Q96FS4 1042 aa6.13□□□□□ -1.43
LIG3-206ENST00000586058 ZNF514Q96K75 400 aaPredicted RBP6.13□□□□□ -1.43
LIG3-206ENST00000586058 FOPNLQ96NB1 174 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms