RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, human

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMCHD1-208	ENST00000583344	STOX1	Q6ZVD7	989 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	TRMT1L	Q7Z2T5	733 aa	Known RBP	4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	SUGP1	Q8IWZ8	645 aa	Known RBP	4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	KLHDC8B	Q8IXV7	354 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	CACNA2D3	Q8IZS8	1091 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	DNAAF1	Q8NEP3	725 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	OR6Y1	Q8NGX8	325 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	TBC1D20	Q96BZ9	403 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	RNFT2	Q96EX2	444 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	PPP1R13B	Q96KQ4	1090 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	C3orf30	Q96M34	536 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	TCEANC2	Q96MN5	208 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	XPO4	Q9C0E2	1151 aa	Known RBP	4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	TSPYL1	Q9H0U9	437 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	SPATS2L	Q9NUQ6	558 aa	Known RBP	4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	TRMT1	Q9NXH9	659 aa	Known RBP	4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ZNF224	Q9NZL3	707 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ORC3	Q9UBD5	711 aa	Predicted RBP	4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	GRHPR	Q9UBQ7	328 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	SRP68	Q9UHB9	627 aa	Known RBP	4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	POLG2	Q9UHN1	485 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	SLCO3A1	Q9UIG8	710 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	DBNL	Q9UJU6	430 aa	Known RBP	4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	GAB2	Q9UQC2	676 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	MYH15	Q9Y2K3	1946 aa		4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	SIPA1L3	O60292	1781 aa	Predicted RBP	4.07	□□□□□ -1.76
SMCHD1-208	ENST00000583344	MAP3K15	Q6ZN16	1313 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	P2RY10	O00398	339 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	RNF113A	O15541	343 aa	Known RBP	4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ZSCAN12	O43309	604 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	STX10	O60499	249 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ATP2C2	O75185	946 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	CIAO1	O76071	339 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	GAGE7	O76087	117 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	RGS11	O94810	467 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ZFY	P08048	801 aa	Predicted RBP	4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	GAGE12F	P0CL80	117 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	GAGE12G	P0CL81	117 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	GAGE12I	P0CL82	117 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	PNMA6A	P0CW24	399 aa	Predicted RBP	4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	HSPD1	P10809	573 aa	Known RBP	4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	HNF1B	P35680	557 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	LIFR	P42702	1097 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	NDUFA8	P51970	172 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	TFCP2	Q12800	502 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ZNF155	Q12901	538 aa	Predicted RBP	4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	GAGE1	Q13065	139 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	GAGE4	Q13068	117 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	CUL4B	Q13620	913 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	TNFAIP1	Q13829	316 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	PRKG1	Q13976	671 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	KRT71	Q3SY84	523 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	TEX35	Q5T0J7	233 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ZNF790	Q6PG37	636 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	SYT10	Q6XYQ8	523 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	COPS6	Q7L5N1	327 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ATG9A	Q7Z3C6	839 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ZC3HC1	Q86WB0	502 aa	Known RBP	4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	LURAP1L	Q8IV03	231 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	IQUB	Q8NA54	791 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	CREB3L4	Q8TEY5	395 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	TRAPPC12	Q8WVT3	735 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	USP13	Q92995	863 aa	Predicted RBP	4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ERP27	Q96DN0	273 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	MASTL	Q96GX5	879 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	SEC62	Q99442	399 aa	Known RBP	4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	NPL	Q9BXD5	320 aa	Predicted RBP	4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	SLC26A6	Q9BXS9	759 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	HSD3B7	Q9H2F3	369 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	CHODL	Q9H9P2	273 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ENTPD7	Q9NQZ7	604 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	RASSF1	Q9NS23	344 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	CYSLTR2	Q9NS75	346 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ZFP57	Q9NU63	452 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ARGLU1	Q9NWB6	273 aa	Predicted RBP	4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	IFNK	Q9P0W0	207 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	SIX4	Q9UIU6	781 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	KCNS2	Q9ULS6	477 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	CLIC4	Q9Y696	253 aa		4.06	□□□□□ -1.76
SMCHD1-208	ENST00000583344	SLIT3	O75094	1523 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ABCC6	O95255	1503 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	CARMIL3	Q8ND23	1372 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ABCC12	Q96J65	1359 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	SPEF2	Q9C093	1822 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	STRCP1	A6NGW2	1772 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344		A0A0G2JPF8	293 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344		A0A1B0GVC2	190 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344		A0A1B0GVL5	298 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	FAM172BP	A6NC97	362 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	HNRNPCL3	B7ZW38	293 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	IPO5	O00410	1097 aa	Known RBP	4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	MAP2K7	O14733	419 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	IRAK2	O43187	625 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	ZIC3	O60481	467 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	HNRNPCL1	O60812	293 aa	Known RBP	4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	SLC22A3	O75751	556 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	TUBB	P07437	444 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	HNRNPCL4	P0DMR1	293 aa		4.05	□□□□□ -1.76
SMCHD1-208	ENST00000583344	GM2A	P17900	193 aa		4.05	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms