RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 CSNK1DP48730 415 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 ACADVLP49748 655 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 MMEL1Q495T6 779 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 LPCAT4Q643R3 524 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 DDIASQ8IXT1 998 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 FIBCD1Q8N539 461 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 FAM156AQ8NDB6 213 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 LMLNQ96KR4 655 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 RPL10LQ96L21 214 aaKnown RBP20.09■□□□□ 0.81
CLN3-230ENST00000568076 PLEKHG4BQ96PX9 1271 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 BOCQ9BWV1 1114 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 C1orf232A0A0U1RR37 186 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 E7ENX8 843 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 ACOT8O14734 319 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 LIN7AO14910 233 aaPredicted RBP20.08■□□□□ 0.81
CLN3-230ENST00000568076 LINC00032P0C843 101 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 CCR2P41597 374 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 RPL26P61254 145 aaKnown RBP20.08■□□□□ 0.81
CLN3-230ENST00000568076 LRRC36Q1X8D7 754 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 TXNDC11Q6PKC3 985 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 SYVN1Q86TM6 617 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 SERPINA9Q86WD7 417 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 GPSM1Q86YR5 675 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 KLHL23Q8NBE8 558 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 SLC22A17Q8WUG5 538 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 CORO1BQ9BR76 489 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 SLC25A23Q9BV35 468 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 POLG2Q9UHN1 485 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 DHRS7Q9Y394 339 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 TIMM22Q9Y584 194 aa20.08■□□□□ 0.81
CLN3-230ENST00000568076 CXCL14O95715 111 aa20.08■□□□□ 0.8
CLN3-230ENST00000568076 PEX2P28328 305 aa20.08■□□□□ 0.8
CLN3-230ENST00000568076 PSMD8P48556 350 aa20.08■□□□□ 0.8
CLN3-230ENST00000568076 STK19P49842 368 aaPredicted RBP20.08■□□□□ 0.8
CLN3-230ENST00000568076 IRGCQ6NXR0 463 aa20.08■□□□□ 0.8
CLN3-230ENST00000568076 CERS6Q6ZMG9 384 aa20.08■□□□□ 0.8
CLN3-230ENST00000568076 CMTM8Q8IZV2 173 aa20.08■□□□□ 0.8
CLN3-230ENST00000568076 KREMEN2Q8NCW0 462 aa20.08■□□□□ 0.8
CLN3-230ENST00000568076 RIN3Q8TB24 985 aa20.08■□□□□ 0.8
CLN3-230ENST00000568076 C11orf49Q9H6J7 331 aa20.08■□□□□ 0.8
CLN3-230ENST00000568076 IL26Q9NPH9 171 aa20.08■□□□□ 0.8
CLN3-230ENST00000568076 CCL26Q9Y258 94 aa20.08■□□□□ 0.8
CLN3-230ENST00000568076 SOCS5O75159 536 aa20.07■□□□□ 0.8
CLN3-230ENST00000568076 BCAS2O75934 225 aaPredicted RBP20.07■□□□□ 0.8
CLN3-230ENST00000568076 TCN1P20061 433 aaPredicted RBP20.07■□□□□ 0.8
CLN3-230ENST00000568076 ATXN3P54252 364 aaPredicted RBP20.07■□□□□ 0.8
CLN3-230ENST00000568076 MRPS22P82650 360 aaKnown RBP20.07■□□□□ 0.8
CLN3-230ENST00000568076 TGFBIQ15582 683 aa20.07■□□□□ 0.8
CLN3-230ENST00000568076 BHLHE22Q8NFJ8 381 aaPredicted RBP20.07■□□□□ 0.8
CLN3-230ENST00000568076 LKAAEAR1Q8TD35 194 aa20.07■□□□□ 0.8
CLN3-230ENST00000568076 HCFC1R1Q9NWW0 138 aa20.07■□□□□ 0.8
CLN3-230ENST00000568076 PCDHB1Q9Y5F3 818 aa20.07■□□□□ 0.8
CLN3-230ENST00000568076 PRSS21Q9Y6M0 314 aa20.07■□□□□ 0.8
CLN3-230ENST00000568076 TRIM38O00635 465 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 E2F3O00716 465 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 MRASO14807 208 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 CASQ2O14958 399 aaPredicted RBP20.06■□□□□ 0.8
CLN3-230ENST00000568076 KIAA0355O15063 1070 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 CCL16O15467 120 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 NRP2O60462 931 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 CSPG5O95196 566 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 IGSF6O95976 241 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 SRCP12931 536 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 BPIP17213 487 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 HLA-FP30511 346 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 MAPK8P45983 427 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 NME5P56597 212 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 STX1BP61266 288 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 KLC1Q07866 573 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 NFATC2Q13469 925 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 C8orf82Q6P1X6 216 aaPredicted RBP20.06■□□□□ 0.8
CLN3-230ENST00000568076 CCDC149Q6ZUS6 474 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 OR2AP1Q8NGE2 309 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.06■□□□□ 0.8
CLN3-230ENST00000568076 TUBGCP3Q96CW5 907 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 CXorf56Q9H5V9 222 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 ASB8Q9H765 288 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 ATP13A3Q9H7F0 1226 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 ADA2Q9NZK5 511 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 CD274Q9NZQ7 290 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 EIF2B4Q9UI10 523 aaKnown RBP20.06■□□□□ 0.8
CLN3-230ENST00000568076 TSR3Q9UJK0 312 aaKnown RBP20.06■□□□□ 0.8
CLN3-230ENST00000568076 PSMD13Q9UNM6 376 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 SCN8AQ9UQD0 1980 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 CAPN8A6NHC0 703 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 A8MX80 341 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 SMNDC1O75940 238 aaKnown RBP eCLIP20.06■□□□□ 0.8
CLN3-230ENST00000568076 BAIAP3O94812 1187 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 UGT1A6P19224 532 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 UGT1A1P22309 533 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 UGT1A4P22310 534 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 UGT1A3P35503 534 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 UGT1A5P35504 534 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 KIF19Q2TAC6 998 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 SFT2D3Q587I9 215 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 PITRM1Q5JRX3 1037 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 SNX20Q7Z614 316 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 TSPAN33Q86UF1 283 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 RETREG3Q86VR2 466 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 PDSS2Q86YH6 399 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms