RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 SLC12A9Q9BXP2 914 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 KLC4Q9NSK0 619 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 DDX56Q9NY93 547 aaKnown RBP15.88■□□□□ 0.13
CLN3-229ENST00000567963 NFKBIL1Q9UBC1 381 aaPredicted RBP15.88■□□□□ 0.13
CLN3-229ENST00000567963 CPNE7Q9UBL6 633 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 ZNF711Q9Y462 761 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 MFAP3LO75121 409 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 FAM87AP0C7U9 286 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 ITGB6P18564 788 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 DYNLT1P63172 113 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 MC2RQ01718 297 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 ODF2Q5BJF6 829 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 MFSD7Q6UXD7 560 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 AVL9Q8NBF6 648 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 GLYATL1Q969I3 302 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 TEFMQ96QE5 360 aaKnown RBP15.87■□□□□ 0.13
CLN3-229ENST00000567963 GPR63Q9BZJ6 419 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 SPRY4Q9C004 299 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 GLOD4Q9HC38 313 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 FBXO8Q9NRD0 319 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 STARD5Q9NSY2 213 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 PILRAQ9UKJ1 303 aa15.87■□□□□ 0.13
CLN3-229ENST00000567963 ASH1LQ9NR48 2969 aaKnown RBP15.87■□□□□ 0.13
CLN3-229ENST00000567963 A0A0A6YYK5 440 aaPredicted RBP15.86■□□□□ 0.13
CLN3-229ENST00000567963 SLC28A2O43868 658 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 SLC4A1P02730 911 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 SFTPCP11686 197 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 TNNT1P13805 278 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 LIFP15018 202 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 BPIP17213 487 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 XRCC1P18887 633 aaPredicted RBP15.86■□□□□ 0.13
CLN3-229ENST00000567963 NR2C2P49116 596 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 UBE2IP63279 158 aaKnown RBP15.86■□□□□ 0.13
CLN3-229ENST00000567963 TCEAL1Q15170 157 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 CCDC70Q6NSX1 233 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 BZW1Q7L1Q6 419 aaKnown RBP15.86■□□□□ 0.13
CLN3-229ENST00000567963 CACNA2D3Q8IZS8 1091 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 RTP4Q96DX8 246 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 TEKT5Q96M29 485 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 PLEKHG4BQ96PX9 1271 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 SRPK1Q96SB4 655 aaKnown RBP15.86■□□□□ 0.13
CLN3-229ENST00000567963 CTRCQ99895 268 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 TBC1D10AQ9BXI6 508 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 FAM117AQ9C073 453 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 OSGEPL1Q9H4B0 414 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 EPB41L1Q9H4G0 881 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 SCHIP1Q9P0W5 487 aaPredicted RBP15.86■□□□□ 0.13
CLN3-229ENST00000567963 SAE1Q9UBE0 346 aaPredicted RBP15.86■□□□□ 0.13
CLN3-229ENST00000567963 SLC23A2Q9UGH3 650 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 INTUQ9ULD6 942 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 HYOU1Q9Y4L1 999 aa15.86■□□□□ 0.13
CLN3-229ENST00000567963 SETXQ7Z333 2677 aaKnown RBP15.86■□□□□ 0.13
CLN3-229ENST00000567963 AURKAO14965 403 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 KMOO15229 486 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 RAD1O60671 282 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 PMPCBO75439 489 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 NDST3O95803 873 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 COMTP21964 271 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 PTPN3P26045 913 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 CDKN2BP42772 138 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 MAPK9P45984 424 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 NOP2P46087 812 aaKnown RBP15.85■□□□□ 0.13
CLN3-229ENST00000567963 PRKD1Q15139 912 aaPredicted RBP15.85■□□□□ 0.13
CLN3-229ENST00000567963 CRTC3Q6UUV7 619 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 CEACAM20Q6UY09 585 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 ZPBPQ9BS86 351 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 UCK1Q9HA47 277 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 UBP1Q9NZI7 540 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 SPO11Q9Y5K1 396 aa15.85■□□□□ 0.13
CLN3-229ENST00000567963 LILRA5A6NI73 299 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 VEGFDO43915 354 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 MTX2O75431 263 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 CDK14O94921 469 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 ZNF7P17097 686 aaPredicted RBP15.84■□□□□ 0.13
CLN3-229ENST00000567963 CD68P34810 354 aaPredicted RBP15.84■□□□□ 0.13
CLN3-229ENST00000567963 CLCA4Q14CN2 919 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 TAZQ16635 292 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 INSCQ1MX18 579 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 SKOR2Q2VWA4 1001 aaPredicted RBP15.84■□□□□ 0.13
CLN3-229ENST00000567963 PRICKLE2Q7Z3G6 844 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 LRRTM4Q86VH4 590 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 PLXDC1Q8IUK5 500 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 ZNF547Q8IVP9 402 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 TFB1MQ8WVM0 346 aaKnown RBP15.84■□□□□ 0.13
CLN3-229ENST00000567963 VPS35Q96QK1 796 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 APMAPQ9HDC9 416 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 BPIFA1Q9NP55 256 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 ZNF624Q9P2J8 865 aaPredicted RBP15.84■□□□□ 0.13
CLN3-229ENST00000567963 KLHL3Q9UH77 587 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 TMPRSS11EQ9UL52 423 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 HEMK1Q9Y5R4 338 aaPredicted RBP15.84■□□□□ 0.13
CLN3-229ENST00000567963 MN1Q10571 1320 aaPredicted RBP15.84■□□□□ 0.13
CLN3-229ENST00000567963 LOC285095A0A1B0GVY8 99 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 PRR19A6NJB7 356 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 PYCARD-AS1I3L0S3 204 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 SPOPO43791 374 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 CST8O60676 142 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 VIPP01282 170 aa15.84■□□□□ 0.13
CLN3-229ENST00000567963 MAP4P27816 1152 aaKnown RBP15.84■□□□□ 0.13
CLN3-229ENST00000567963 HMGCLP35914 325 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms