RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 KIAA1161Q6NSJ0 714 aa30.28■■■□□ 2.44
CTCF-203ENST00000566078 CLEC14AQ86T13 490 aa30.28■■■□□ 2.44
CTCF-203ENST00000566078 DENND1AQ8TEH3 1009 aa30.28■■■□□ 2.44
CTCF-203ENST00000566078 NAT14Q8WUY8 206 aa30.28■■■□□ 2.44
CTCF-203ENST00000566078 PREBQ9HCU5 417 aa30.28■■■□□ 2.44
CTCF-203ENST00000566078 PRSS21Q9Y6M0 314 aa30.28■■■□□ 2.44
CTCF-203ENST00000566078 IGLV3-16A0A075B6K0 115 aa30.27■■■□□ 2.44
CTCF-203ENST00000566078 A0A087X1B8 175 aa30.27■■■□□ 2.44
CTCF-203ENST00000566078 RNGTTO60942 597 aaKnown RBP30.27■■■□□ 2.44
CTCF-203ENST00000566078 NSG1P42857 185 aa30.27■■■□□ 2.44
CTCF-203ENST00000566078 TPMTP51580 245 aa30.27■■■□□ 2.44
CTCF-203ENST00000566078 RPS21P63220 83 aaKnown RBP30.27■■■□□ 2.44
CTCF-203ENST00000566078 TTC19Q6DKK2 380 aaPredicted RBP30.27■■■□□ 2.44
CTCF-203ENST00000566078 PTRHD1Q6GMV3 140 aaKnown RBP30.27■■■□□ 2.44
CTCF-203ENST00000566078 PLD6Q8N2A8 252 aaKnown RBP30.27■■■□□ 2.44
CTCF-203ENST00000566078 PJA1Q8NG27 643 aa30.27■■■□□ 2.44
CTCF-203ENST00000566078 BTN2A2Q8WVV5 523 aa30.27■■■□□ 2.44
CTCF-203ENST00000566078 GLYATL1Q969I3 302 aa30.27■■■□□ 2.44
CTCF-203ENST00000566078 FAM111AQ96PZ2 611 aa30.27■■■□□ 2.44
CTCF-203ENST00000566078 GPAMQ9HCL2 828 aa30.27■■■□□ 2.44
CTCF-203ENST00000566078 KCTD5Q9NXV2 234 aa30.27■■■□□ 2.44
CTCF-203ENST00000566078 TAS2R13Q9NYV9 303 aa30.27■■■□□ 2.44
CTCF-203ENST00000566078 CAMSAP3Q9P1Y5 1249 aaPredicted RBP30.27■■■□□ 2.44
CTCF-203ENST00000566078 PLLPQ9Y342 182 aa30.27■■■□□ 2.44
CTCF-203ENST00000566078 K7ESM1 405 aa30.26■■■□□ 2.44
CTCF-203ENST00000566078 SOD1P00441 154 aa30.26■■■□□ 2.44
CTCF-203ENST00000566078 MDH1P40925 334 aaKnown RBP30.26■■■□□ 2.44
CTCF-203ENST00000566078 GPR1P46091 355 aa30.26■■■□□ 2.44
CTCF-203ENST00000566078 B4GALNT1Q00973 533 aa30.26■■■□□ 2.44
CTCF-203ENST00000566078 PDAP1Q13442 181 aaKnown RBP30.26■■■□□ 2.44
CTCF-203ENST00000566078 ANO7Q6IWH7 933 aa30.26■■■□□ 2.44
CTCF-203ENST00000566078 SPNS2Q8IVW8 549 aa30.26■■■□□ 2.44
CTCF-203ENST00000566078 CLDN19Q8N6F1 224 aa30.26■■■□□ 2.44
CTCF-203ENST00000566078 DDHD1Q8NEL9 900 aa30.26■■■□□ 2.44
CTCF-203ENST00000566078 TSTD1Q8NFU3 115 aa30.26■■■□□ 2.44
CTCF-203ENST00000566078 HHIPQ96QV1 700 aa30.26■■■□□ 2.44
CTCF-203ENST00000566078 POPDC3Q9HBV1 291 aa30.26■■■□□ 2.44
CTCF-203ENST00000566078 MED16Q9Y2X0 877 aa30.26■■■□□ 2.44
CTCF-203ENST00000566078 TBC1D3DA0A087WVF3 549 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 TBC1D3IA0A087WXS9 549 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 TBC1D3EA0A087X179 549 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 TBC1D3KA0A087X1G2 549 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 A0A1W2PQU0 124 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 TBC1D3FA6NER0 549 aaPredicted RBP30.25■■■□□ 2.43
CTCF-203ENST00000566078 TBC1D3LB9A6J9 549 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 E5RI56 91 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 INPP4BO15327 924 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 DNAJC6O75061 913 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 VPS26AO75436 327 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 GSTA1P08263 222 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 TBC1D3HP0C7X1 549 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 TBC1D3GQ6DHY5 549 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 TBC1D3CQ6IPX1 549 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 LVRNQ6Q4G3 990 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 TBC1D1Q86TI0 1168 aaPredicted RBP30.25■■■□□ 2.43
CTCF-203ENST00000566078 TBC1D3Q8IZP1 549 aaPredicted RBP30.25■■■□□ 2.43
CTCF-203ENST00000566078 KCTD4Q8WVF5 259 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 TSNARE1Q96NA8 513 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 PAIP2Q9BPZ3 127 aaKnown RBP30.25■■■□□ 2.43
CTCF-203ENST00000566078 C1QTNF1Q9BXJ1 281 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 ZNF358Q9NW07 568 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 GRID1Q9ULK0 1009 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 MTX2O75431 263 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 WDR4P57081 412 aaKnown RBP30.25■■■□□ 2.43
CTCF-203ENST00000566078 AGERQ15109 404 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 INSCQ1MX18 579 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 LDLRAP1Q5SW96 308 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 N4BP2L1Q5TBK1 243 aaPredicted RBP30.25■■■□□ 2.43
CTCF-203ENST00000566078 NLRP8Q86W28 1048 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 PHYKPLQ8IUZ5 450 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 CENPLQ8N0S6 344 aaPredicted RBP30.25■■■□□ 2.43
CTCF-203ENST00000566078 DYDC1Q8WWB3 177 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 KCNJ9Q92806 393 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 KLK6Q92876 244 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 DCUN1D1Q96GG9 259 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 GPR21Q99679 349 aa30.25■■■□□ 2.43
CTCF-203ENST00000566078 IQCF5A8MTL0 148 aa30.24■■■□□ 2.43
CTCF-203ENST00000566078 WISP3O95389 354 aaPredicted RBP30.24■■■□□ 2.43
CTCF-203ENST00000566078 PCCBP05166 539 aa30.24■■■□□ 2.43
CTCF-203ENST00000566078 PYGLP06737 847 aa30.24■■■□□ 2.43
CTCF-203ENST00000566078 CHRM3P20309 590 aa30.24■■■□□ 2.43
CTCF-203ENST00000566078 TMEM259Q4ZIN3 620 aa30.24■■■□□ 2.43
CTCF-203ENST00000566078 TMEM31Q5JXX7 168 aa30.24■■■□□ 2.43
CTCF-203ENST00000566078 HHATQ5VTY9 493 aa30.24■■■□□ 2.43
CTCF-203ENST00000566078 C16orf46Q6P387 395 aa30.24■■■□□ 2.43
CTCF-203ENST00000566078 MACC1Q6ZN28 852 aa30.24■■■□□ 2.43
CTCF-203ENST00000566078 HORMAD1Q86X24 394 aa30.24■■■□□ 2.43
CTCF-203ENST00000566078 CAPS2Q9BXY5 557 aa30.24■■■□□ 2.43
CTCF-203ENST00000566078 ITM2CQ9NQX7 267 aa30.24■■■□□ 2.43
CTCF-203ENST00000566078 USP36Q9P275 1121 aaKnown RBP30.24■■■□□ 2.43
CTCF-203ENST00000566078 EBF1Q9UH73 591 aa30.24■■■□□ 2.43
CTCF-203ENST00000566078 CFAP99D6REC4 459 aa30.23■■■□□ 2.43
CTCF-203ENST00000566078 H3BMM5 538 aa30.23■■■□□ 2.43
CTCF-203ENST00000566078 SLC25A14O95258 325 aaPredicted RBP30.23■■■□□ 2.43
CTCF-203ENST00000566078 COL6A2P12110 1019 aa30.23■■■□□ 2.43
CTCF-203ENST00000566078 MSH3P20585 1137 aa30.23■■■□□ 2.43
CTCF-203ENST00000566078 FGL2Q14314 439 aa30.23■■■□□ 2.43
CTCF-203ENST00000566078 ZNF648Q5T619 568 aaPredicted RBP30.23■■■□□ 2.43
CTCF-203ENST00000566078 TMEM207Q6UWW9 146 aa30.23■■■□□ 2.43
CTCF-203ENST00000566078 CCDC91Q7Z6B0 441 aa30.23■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms