RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TMEM120BA0PK00 339 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 ARGFXA6NJG6 315 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 FOXO6A8MYZ6 492 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 MIF4GDA9UHW6 222 aaKnown RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 TMEM114B3SHH9 223 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 H3BML4 177 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 PSMD11O00231 422 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 FPGTO14772 594 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 TO15178 435 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 OGTO15294 1046 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 GPRIN2O60269 458 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 ATP9AO75110 1047 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 MED24O75448 989 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 GPC4O75487 556 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 SNAPINO95295 136 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 BMP10O95393 424 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 PIGNO95427 931 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 TTLL1O95922 423 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 PRR35P0CG20 571 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 CHRM3P20309 590 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 SYT1P21579 422 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 GPD1P21695 349 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 THPOP40225 353 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 ARHGAP25P42331 645 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 TECP42680 631 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 SLC1A1P43005 524 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 HARS2P49590 506 aaKnown RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 TMED10P49755 219 aaKnown RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 GCNT1Q02742 428 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 CREB5Q02930 508 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 ZNF33BQ06732 778 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 FADDQ13158 208 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 XRCC4Q13426 336 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 FGL2Q14314 439 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 CAPRIN1Q14444 709 aaKnown RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 ZNF267Q14586 743 aaPredicted RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 SLC39A14Q15043 492 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 FAM153CQ494X1 144 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 CCDC58Q4VC31 144 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 FAM98BQ52LJ0 330 aaKnown RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 PLAC9Q5JTB6 97 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 TEDDM1Q5T9Z0 273 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 PAPD7Q5XG87 772 aaKnown RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 RFPL4BQ6ZWI9 263 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 MARK2Q7KZI7 788 aaKnown RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 TMCO2Q7Z6W1 182 aaPredicted RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 CHD1LQ86WJ1 897 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 DENND1CQ8IV53 801 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 PM20D2Q8IYS1 436 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 TCP11L2Q8N4U5 519 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 PPFIBP2Q8ND30 876 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 BBS1Q8NFJ9 593 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 LRRC8CQ8TDW0 803 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 DEPDC1BQ8WUY9 529 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 TANKQ92844 425 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 EXT2Q93063 718 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 FKBP10Q96AY3 582 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 GRAMD1AQ96CP6 724 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 HMCESQ96FZ2 354 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 RMND5BQ96G75 393 aaPredicted RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 GBP5Q96PP8 586 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 TRNT1Q96Q11 434 aaKnown RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 TAAR9Q96RI9 348 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 RIT2Q99578 217 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 THUMPD3Q9BV44 507 aaKnown RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 POLR1EQ9GZS1 481 aaKnown RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 SLC26A1Q9H2B4 701 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 ZMAT3Q9HA38 289 aaKnown RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 FBRSL1Q9HCM7 1045 aaKnown RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 TREM1Q9NP99 234 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 IL17RBQ9NRM6 502 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 RCOR3Q9P2K3 495 aaPredicted RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 DNAJB4Q9UDY4 337 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 IPO11Q9UI26 975 aaKnown RBP5.1□□□□□ -1.59
VPS35-205ENST00000563984 NFE2L3Q9Y4A8 694 aa5.1□□□□□ -1.59
VPS35-205ENST00000563984 RRBP1Q9P2E9 1410 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 INSRP06213 1382 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 KIF15Q9NS87 1388 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 FAM237AA0A1B0GTK4 181 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 FAM47DPA6NHR8 397 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 LRRC3CA6NJW4 275 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 SRRM3A6NNA2 597 aaPredicted RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 LINC00473A8K010 186 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 H0Y8G0 127 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 CXCL11O14625 94 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 CD3EAPO15446 510 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 RRP8O43159 456 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 CA12O43570 354 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 NDUFA2O43678 99 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 NUDT21O43809 227 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 PTP4A3O75365 173 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 PSIP1O75475 530 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 ERAL1O75616 437 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 BCAS2O75934 225 aaPredicted RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 HEXIM1O94992 359 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 OXSR1O95747 527 aaPredicted RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 THP07101 528 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 CAPN1P07384 714 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 LINGO3P0C6S8 592 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms