RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 MIB1Q86YT6 1006 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 SPATA2LQ8IUW3 424 aaPredicted RBP13.11□□□□□ -0.31
CLN3-210ENST00000563874 DDHD1Q8NEL9 900 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 PDZD8Q8NEN9 1154 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 ASB2Q96Q27 587 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 DOK1Q99704 481 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 CATSPERZQ9NTU4 200 aa13.11□□□□□ -0.31
CLN3-210ENST00000563874 ABI2Q9NYB9 513 aaPredicted RBP13.11□□□□□ -0.31
CLN3-210ENST00000563874 H0Y858 1186 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 TNPO2O14787 897 aaKnown RBP13.1□□□□□ -0.31
CLN3-210ENST00000563874 NOL3O60936 208 aaKnown RBP13.1□□□□□ -0.31
CLN3-210ENST00000563874 IL7RP16871 459 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 POLR2JP52435 117 aaKnown RBP13.1□□□□□ -0.31
CLN3-210ENST00000563874 PIGFQ07326 219 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 NFATC3Q12968 1075 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 PPP1R8Q12972 351 aaKnown RBP13.1□□□□□ -0.31
CLN3-210ENST00000563874 SELPLGQ14242 412 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 RBBP7Q16576 425 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 CCNYL2Q5T2Q4 361 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 ANKS6Q68DC2 871 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 PLEKHH3Q7Z736 793 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 STK32CQ86UX6 486 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 OR4L1Q8NH43 312 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 IGSF8Q969P0 613 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 TLR9Q9NR96 1032 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 AIG1Q9NVV5 245 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 FLRT1Q9NZU1 646 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 C1orf232A0A0U1RR37 186 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 K7EPI3 171 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 BTN3A1O00481 513 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 SNX2O60749 519 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 OCM2P0CE71 109 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 OCMP0CE72 109 aaPredicted RBP13.1□□□□□ -0.31
CLN3-210ENST00000563874 ACVRL1P37023 503 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 HLCSP50747 726 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 ADARB1P78563 741 aaKnown RBP13.1□□□□□ -0.31
CLN3-210ENST00000563874 EFEMP1Q12805 493 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 BFSP2Q13515 415 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 DDR2Q16832 855 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 MS4A13Q5J8X5 152 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 RAP1GAP2Q684P5 730 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 GLYATQ6IB77 296 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 USP51Q70EK9 711 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 CLEC4FQ8N1N0 589 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 UMODL1-AS1Q8N2C9 162 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 SLC15A4Q8N697 577 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 CDYL2Q8N8U2 506 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 FNDC5Q8NAU1 212 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 STAG3L4Q8TBR4 150 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 COX4I2Q96KJ9 171 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 B3GALT6Q96L58 329 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 PKMYT1Q99640 499 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 ZYG11BQ9C0D3 744 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 TBCCD1Q9NVR7 557 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 SELENONQ9NZV5 590 aa13.1□□□□□ -0.31
CLN3-210ENST00000563874 TNFRSF10BO14763 440 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 CCNA2P20248 432 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 CDKN1CP49918 316 aaPredicted RBP13.09□□□□□ -0.31
CLN3-210ENST00000563874 GALNT18Q6P9A2 607 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 DCDC5Q6ZRR9 648 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 GALNT7Q86SF2 657 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 PTRH1Q86Y79 214 aaKnown RBP13.09□□□□□ -0.31
CLN3-210ENST00000563874 TMEM199Q8N511 208 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 RHEBL1Q8TAI7 183 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 AARSD1Q9BTE6 412 aaKnown RBP13.09□□□□□ -0.31
CLN3-210ENST00000563874 HGH1Q9BTY7 390 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 TRIM62Q9BVG3 475 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 TFB2MQ9H5Q4 396 aaKnown RBP13.09□□□□□ -0.31
CLN3-210ENST00000563874 NTN4Q9HB63 628 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 MED16Q9Y2X0 877 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 HAS3O00219 553 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 SYNCRIPO60506 623 aaKnown RBP13.09□□□□□ -0.31
CLN3-210ENST00000563874 KERAO60938 352 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 EEDO75530 441 aaKnown RBP13.09□□□□□ -0.31
CLN3-210ENST00000563874 INHBBP09529 407 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 TTKP33981 857 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 MLLT10P55197 1068 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 FOXM1Q08050 763 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 CCL14Q16627 93 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 IMPG1Q17R60 797 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 SETMARQ53H47 684 aaPredicted RBP13.09□□□□□ -0.31
CLN3-210ENST00000563874 ANKRD34AQ69YU3 496 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 LRRC49Q8IUZ0 686 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 HS3ST5Q8IZT8 346 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 CENPSQ8N2Z9 138 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 GOLM1Q8NBJ4 401 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 BRI3BPQ8WY22 251 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 SNX19Q92543 992 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 TMBIM1Q969X1 311 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 KIAA1191Q96A73 305 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 PPP1R14BQ96C90 147 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 NSMCE2Q96MF7 247 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 GLT1D1Q96MS3 346 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 SERPINB11Q96P15 392 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 GPR21Q99679 349 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 BDH2Q9BUT1 245 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 LEF1Q9UJU2 399 aaPredicted RBP13.09□□□□□ -0.31
CLN3-210ENST00000563874 COQ6Q9Y2Z9 468 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 PCDHGA11Q9Y5H2 935 aa13.09□□□□□ -0.31
CLN3-210ENST00000563874 LOC285095A0A1B0GVY8 99 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms