RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 PTGFRNQ9P2B2 879 aa10.4□□□□□ -0.74
HDGFL3-204ENST00000563790 FBXL4Q9UKA2 621 aa10.4□□□□□ -0.74
HDGFL3-204ENST00000563790 SLC17A4Q9Y2C5 497 aa10.4□□□□□ -0.74
HDGFL3-204ENST00000563790 PTRH2Q9Y3E5 179 aaKnown RBP10.4□□□□□ -0.74
HDGFL3-204ENST00000563790 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.4□□□□□ -0.74
HDGFL3-204ENST00000563790 KCNU1A8MYU2 1149 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 KRIT1O00522 736 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 XPO1O14980 1071 aaKnown RBP10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 TEX33O43247 280 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 ZNHIT1O43257 154 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 SOX30O94993 753 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 CAPZBP47756 277 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 ANKRD1Q15327 319 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 SNRNP35Q16560 246 aaKnown RBP10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 PTCHD3Q3KNS1 767 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 FBLN7Q53RD9 439 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 TTC38Q5R3I4 469 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 PNCKQ6P2M8 343 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 GDPD4Q6W3E5 623 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 C11orf96Q7Z7L8 435 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 SIX6OS1Q8N1H7 587 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 PELI3Q8N2H9 469 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 RYBPQ8N488 228 aaPredicted RBP10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 ANKRD52Q8NB46 1076 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 CPLX3Q8WVH0 158 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 TATDN2Q93075 761 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 ZNF501Q96CX3 271 aaPredicted RBP10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 PERPQ96FX8 193 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 HMCESQ96FZ2 354 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 ZDHHC12Q96GR4 267 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 FOXP1Q9H334 677 aaPredicted RBP10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 MRPL44Q9H9J2 332 aaKnown RBP10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 PHPT1Q9NRX4 125 aaPredicted RBP10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 EPHA6Q9UF33 1036 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 CNOT8Q9UFF9 292 aaKnown RBP10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 FCF1Q9Y324 198 aaKnown RBP10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 ASB1Q9Y576 335 aa10.39□□□□□ -0.75
HDGFL3-204ENST00000563790 A0A0D9SEW6 157 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 ZMPSTE24O75844 475 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 RECQL5O94762 991 aaPredicted RBP10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 GOSR1O95249 250 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 POP4O95707 220 aaKnown RBP10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 AMD1P17707 334 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 DLG4P78352 724 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 CYP24A1Q07973 514 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 ZC3H12AQ5D1E8 599 aaKnown RBP10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 TIGD7Q6NT04 549 aaPredicted RBP10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 RETSATQ6NUM9 610 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 AVL9Q8NBF6 648 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 FBXO18Q8NFZ0 1043 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 PTERQ96BW5 349 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 CDK5RAP3Q96JB5 506 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 OR2M4Q96R27 311 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 TRIM51Q9BSJ1 452 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 BEX2Q9BXY8 128 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 TEX101Q9BY14 249 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 CUEDC2Q9H467 287 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 L2HGDHQ9H9P8 463 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 PLA2G3Q9NZ20 509 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 CPNE7Q9UBL6 633 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 MKL2Q9ULH7 1088 aa10.38□□□□□ -0.75
HDGFL3-204ENST00000563790 KIR2DS5A0A0G2JLQ3 304 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 A0A0G2JNG1 304 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 CFAP69A5D8W1 941 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 KIR2DS3K7RE56 304 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 VNN1O95497 513 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 RHOCP08134 193 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 VSIG8P0DPA2 414 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 MMP12P39900 470 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 ETV3P41162 512 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 CASP5P51878 434 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 BIRC3Q13489 604 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 OLIG2Q13516 323 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 LRP8Q14114 963 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 KIR2DS5Q14953 304 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 PLCL1Q15111 1095 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 HYAL4Q2M3T9 481 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 ZNF385CQ66K41 422 aaPredicted RBP10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 ATG9BQ674R7 924 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 CERS6Q6ZMG9 384 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 ZNF354CQ86Y25 554 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 KMT5CQ86Y97 462 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 GHDCQ8N2G8 530 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 D2HGDHQ8N465 521 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 LIX1Q8N485 282 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 MAPK1IP1LQ8NDC0 245 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 OR2AP1Q8NGE2 309 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 IRGQQ8WZA9 623 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 RSC1A1Q92681 617 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 THOC3Q96J01 351 aaKnown RBP10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 SIGLEC12Q96PQ1 595 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 KCTD15Q96SI1 283 aaPredicted RBP10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 HERPUD2Q9BSE4 406 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 RAB33BQ9H082 229 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 TSPAN10Q9H1Z9 355 aaPredicted RBP10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 PPP4R2Q9NY27 417 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 TBC1D29Q9UFV1 150 aa10.37□□□□□ -0.75
HDGFL3-204ENST00000563790 A0A1W2PPR1 153 aa10.36□□□□□ -0.75
HDGFL3-204ENST00000563790 FAM227AF5H4B4 570 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms