RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 TMEM168Q9H0V1 697 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 OR2AG1Q9H205 316 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 CYP4F12Q9HCS2 524 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 XAB2Q9HCS7 855 aaKnown RBP9.69□□□□□ -0.86
CLK3-208ENST00000562626 TMEM9BQ9NQ34 198 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 ZDHHC18Q9NUE0 388 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 SMOXQ9NWM0 555 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 KCTD5Q9NXV2 234 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 BFARQ9NZS9 450 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 WHRNQ9P202 907 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 SLC17A6Q9P2U8 582 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 KLQ9UEF7 1012 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 RALYQ9UKM9 306 aaKnown RBP9.69□□□□□ -0.86
CLK3-208ENST00000562626 RIMKLBQ9ULI2 386 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 SUFUQ9UMX1 484 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 CHMP2BQ9UQN3 213 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 TEX264Q9Y6I9 313 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 PRSS21Q9Y6M0 314 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 CHD6Q8TD26 2715 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 SDR42E2A6NKP2 422 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 E7ESA3 106 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 TRIM38O00635 465 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 TOR1BO14657 336 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 FFAR2O15552 330 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 PPFIA2O75334 1257 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 SLC25A14O95258 325 aaPredicted RBP9.68□□□□□ -0.86
CLK3-208ENST00000562626 ASMTLO95671 621 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 CER1O95813 267 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 DGKAP23743 735 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 AK4P27144 223 aaPredicted RBP9.68□□□□□ -0.86
CLK3-208ENST00000562626 GNPDA1P46926 289 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 CCT8P50990 548 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 HK3P52790 923 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 PLTPP55058 493 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 PPARDQ03181 441 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 PTK2BQ14289 1009 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 DBN1Q16643 649 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 PLA2G4EQ3MJ16 856 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 ANKRD20A4Q4UJ75 823 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 PYCR3Q53H96 274 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 PRRT3Q5FWE3 981 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 ZRANB3Q5FWF4 1079 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 CRTC3Q6UUV7 619 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 DBX2Q6ZNG2 339 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 SNX20Q7Z614 316 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 C11orf96Q7Z7L8 435 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 PCGF5Q86SE9 256 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 TMEM135Q86UB9 458 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 SERPINA9Q86WD7 417 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 NRROSQ86YC3 692 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 DCP2Q8IU60 420 aaKnown RBP9.68□□□□□ -0.86
CLK3-208ENST00000562626 NXPE1Q8N323 547 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 BEND7Q8N7W2 519 aaPredicted RBP9.68□□□□□ -0.86
CLK3-208ENST00000562626 CEP112Q8N8E3 955 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 MNS1Q8NEH6 495 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 DDHD1Q8NEL9 900 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 DTX3LQ8TDB6 740 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 STAMBPL1Q96FJ0 436 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 ZDHHC5Q9C0B5 715 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 CDH19Q9H159 772 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 CARS2Q9HA77 564 aaKnown RBP9.68□□□□□ -0.86
CLK3-208ENST00000562626 MRM3Q9HC36 420 aaKnown RBP9.68□□□□□ -0.86
CLK3-208ENST00000562626 EPB41L5Q9HCM4 733 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 RAD18Q9NS91 495 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 SLC23A2Q9UGH3 650 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 APOBEC3BQ9UH17 382 aaKnown RBP9.68□□□□□ -0.86
CLK3-208ENST00000562626 MOSPD1Q9UJG1 213 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 DGKBQ9Y6T7 804 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 SPEGQ15772 3267 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 CFAP47Q6ZTR5 3102 aa9.68□□□□□ -0.86
CLK3-208ENST00000562626 IGLV3-16A0A075B6K0 115 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 LY6G6EA0A0G2JKS1 128 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 FAM237BA0A1B0GVD1 139 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 OR2AG2A6NM03 316 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 TNFRSF10CO14798 259 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 TM4SF5O14894 197 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 CHUKO15111 745 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 CASC3O15234 703 aaKnown RBP9.67□□□□□ -0.86
CLK3-208ENST00000562626 NUAK1O60285 661 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 OR1I1O60431 355 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 MAGEC1O60732 1142 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 RASGRP1O95267 797 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 VAPBO95292 243 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 EML2O95834 649 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 PYGLP06737 847 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 IVLP07476 585 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 RHOXF2BP0C7M4 288 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 ZNF883P0CG24 379 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 ACRV1P26436 265 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 HTR1BP28222 390 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 HADHAP40939 763 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 ATXN3P54252 364 aaPredicted RBP9.67□□□□□ -0.86
CLK3-208ENST00000562626 SARNPP82979 210 aaKnown RBP9.67□□□□□ -0.86
CLK3-208ENST00000562626 PDE1BQ01064 536 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 CACNG1Q06432 222 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 TMEM115Q12893 351 aaPredicted RBP9.67□□□□□ -0.86
CLK3-208ENST00000562626 PDIA2Q13087 525 aaKnown RBP9.67□□□□□ -0.86
CLK3-208ENST00000562626 ITGA9Q13797 1035 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 HIF1AQ16665 826 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 SKIDA1Q1XH10 827 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms