RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	SLC28A3	Q9HAS3	691 aa		4.1	□□□□□ -1.75
VPS13C-208	ENST00000559119	LTB4R2	Q9NPC1	389 aa		4.1	□□□□□ -1.75
VPS13C-208	ENST00000559119	KCNJ14	Q9UNX9	436 aa		4.1	□□□□□ -1.75
VPS13C-208	ENST00000559119		A0A0G2JNG1	304 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	TMEM178B	H3BS89	294 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119		M0QZ24	198 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	DCX	O43602	365 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	SEC31A	O94979	1220 aa	Known RBP	4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	IGHV4-38-2	P0DP08	117 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	UGT1A1	P22309	533 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	UBA1	P22314	1058 aa	Known RBP	4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	GGT5	P36269	586 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	KCNJ10	P78508	379 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	KIR2DS5	Q14953	304 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	ZNF239	Q16600	458 aa	Known RBP	4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	GSTA3	Q16772	222 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	FFAR4	Q5NUL3	377 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	PAPD4	Q6PIY7	484 aa	Known RBP	4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	PLXDC2	Q6UX71	529 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	CPO	Q8IVL8	374 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	NKAP	Q8N5F7	415 aa	Known RBP	4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	UTP15	Q8TED0	518 aa	Known RBP	4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	HERVK_113	Q902F9	699 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	RBM4B	Q9BQ04	359 aa	Known RBP	4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	VEZT	Q9HBM0	779 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119	RPS10P5	Q9NQ39	176 aa		4.09	□□□□□ -1.75
VPS13C-208	ENST00000559119		A0A1W2PP11	408 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	C5orf60	A6NFR6	353 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	LDLRAD4	O15165	306 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	DCTN2	Q13561	401 aa	Known RBP	4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	GPR68	Q15743	365 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	PACS1	Q6VY07	963 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	MFSD6	Q6ZSS7	791 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	PPHLN1	Q8NEY8	458 aa	Known RBP	4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	OR2T6	Q8NHC8	308 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	IGSF8	Q969P0	613 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	ZBTB10	Q96DT7	871 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	MOCOS	Q96EN8	888 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	APOPT1	Q96IL0	206 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	IWS1	Q96ST2	819 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	CABLES2	Q9BTV7	478 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	ISCA1	Q9BUE6	129 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	KIF9	Q9HAQ2	790 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	ASAH2	Q9NR71	780 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	STK36	Q9NRP7	1315 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	SLC38A7	Q9NVC3	462 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	KCND2	Q9NZV8	630 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	DISP3	Q9P2K9	1392 aa		4.08	□□□□□ -1.76
VPS13C-208	ENST00000559119	TFAP2A	P05549	437 aa		4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	KRT19	P08727	400 aa		4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	ZNF182	P17025	639 aa	Predicted RBP	4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	CPOX	P36551	454 aa		4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	BMX	P51813	675 aa		4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	NEXN	Q0ZGT2	675 aa		4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	ALG11	Q2TAA5	492 aa		4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	PPP4R1	Q8TF05	950 aa		4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	RRNAD1	Q96FB5	475 aa	Known RBP	4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	PRMT6	Q96LA8	375 aa	Predicted RBP	4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	SIL1	Q9H173	461 aa		4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	PRKRIP1	Q9H875	184 aa	Predicted RBP	4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	APOBEC3G	Q9HC16	384 aa	Known RBP	4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	KLHL9	Q9P2J3	617 aa		4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	OR14J1	Q9UGF5	321 aa		4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119	HAO1	Q9UJM8	370 aa		4.07	□□□□□ -1.76
VPS13C-208	ENST00000559119		E9PQ18	207 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	PLOD2	O00469	737 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	SYNCRIP	O60506	623 aa	Known RBP	4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	TCEA3	O75764	348 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	ABCD1	P33897	745 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	ARL1	P40616	181 aa	Predicted RBP	4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	SLC8A3	P57103	927 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	PPFIA1	Q13136	1202 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	DUOXA1	Q1HG43	343 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	GSTA5	Q7RTV2	222 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	PAF1	Q8N7H5	531 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	OR14L1P	Q8NHC6	308 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	PPP1R13B	Q96KQ4	1090 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	SYT11	Q9BT88	431 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	BRF2	Q9HAW0	419 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	ECHDC1	Q9NTX5	307 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	STK39	Q9UEW8	545 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	EXOG	Q9Y2C4	368 aa	Known RBP	4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	PYGO1	Q9Y3Y4	419 aa		4.06	□□□□□ -1.76
VPS13C-208	ENST00000559119	PRAG1	Q86YV5	1406 aa		4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	FLT1	P17948	1338 aa		4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	FAM237A	A0A1B0GTK4	181 aa		4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	EML2	O95834	649 aa		4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	IL7R	P16871	459 aa		4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	TYMP	P19971	482 aa		4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	KRT9	P35527	623 aa		4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	CTCF	P49711	727 aa	Predicted RBP	4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	TBX2	Q13207	712 aa	Predicted RBP	4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	PDE1C	Q14123	709 aa	Predicted RBP	4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	LRRTM4	Q86VH4	590 aa		4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	GBGT1	Q8N5D6	347 aa		4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	GTF3C6	Q969F1	213 aa		4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	GMPPA	Q96IJ6	420 aa	Predicted RBP	4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	TMEM68	Q96MH6	324 aa		4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	SIX2	Q9NPC8	291 aa		4.05	□□□□□ -1.76
VPS13C-208	ENST00000559119	ATAD3A	Q9NVI7	634 aa		4.05	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms