RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 C3orf49Q96BT1 292 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 TRMOQ9BU70 441 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 ZHX3Q9H4I2 956 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.08□□□□□ -1.44
RTF1-204ENST00000558117 TMEM45AQ9NWC5 275 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 C19orf53Q9UNZ5 99 aaPredicted RBP6.08□□□□□ -1.44
RTF1-204ENST00000558117 SLC8A2Q9UPR5 921 aa6.08□□□□□ -1.44
RTF1-204ENST00000558117 COPG1Q9Y678 874 aaKnown RBP6.08□□□□□ -1.44
RTF1-204ENST00000558117 ZNF532Q9HCE3 1301 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 HMX3A6NHT5 357 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 C3orf70A6NLC5 250 aaPredicted RBP6.07□□□□□ -1.44
RTF1-204ENST00000558117 H0Y3Z8 333 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 GJB3O75712 270 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 UBTFL1P0CB47 393 aaPredicted RBP6.07□□□□□ -1.44
RTF1-204ENST00000558117 HLA-EP13747 358 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 PRF1P14222 555 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 NR4A2P43354 598 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 SLC11A1P49279 550 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 RCAN1P53805 252 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 PRKAA2P54646 552 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 PDCD2Q16342 344 aaPredicted RBP6.07□□□□□ -1.44
RTF1-204ENST00000558117 LIPMQ5VYY2 423 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 PALB2Q86YC2 1186 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 GALNT15Q8N3T1 639 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 ADPRHL1Q8NDY3 354 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 CSGALNACT1Q8TDX6 532 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 TRMT61BQ9BVS5 477 aaKnown RBP6.07□□□□□ -1.44
RTF1-204ENST00000558117 GTPBP2Q9BX10 602 aaKnown RBP6.07□□□□□ -1.44
RTF1-204ENST00000558117 TMEM120AQ9BXJ8 343 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 MRPL9Q9BYD2 267 aaKnown RBP6.07□□□□□ -1.44
RTF1-204ENST00000558117 FOXP1Q9H334 677 aaPredicted RBP6.07□□□□□ -1.44
RTF1-204ENST00000558117 KCND3Q9UK17 655 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 GTF2A1LQ9UNN4 478 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 RCE1Q9Y256 329 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 CABIN1Q9Y6J0 2220 aa6.07□□□□□ -1.44
RTF1-204ENST00000558117 WDR19Q8NEZ3 1342 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 FN1P02751 2386 aaKnown RBP6.06□□□□□ -1.44
RTF1-204ENST00000558117 MYH4Q9Y623 1939 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 hCG_1642624A0A1W2PR95 340 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 MBD3L5A6NJ08 208 aaPredicted RBP6.06□□□□□ -1.44
RTF1-204ENST00000558117 PLK4O00444 970 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 UGDHO60701 494 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 CNOT3O75175 753 aaKnown RBP6.06□□□□□ -1.44
RTF1-204ENST00000558117 BCKDHBP21953 392 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 TGM2P21980 687 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 SERPINA4P29622 427 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 GDI1P31150 447 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 DHPSP49366 369 aaPredicted RBP6.06□□□□□ -1.44
RTF1-204ENST00000558117 PPM1FP49593 454 aaPredicted RBP6.06□□□□□ -1.44
RTF1-204ENST00000558117 ATXN3P54252 364 aaPredicted RBP6.06□□□□□ -1.44
RTF1-204ENST00000558117 SEMG2Q02383 582 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 PGM5Q15124 567 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 SMAD1Q15797 465 aaKnown RBP6.06□□□□□ -1.44
RTF1-204ENST00000558117 SLC9C2Q5TAH2 1124 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 ARHGEF16Q5VV41 709 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 METTL7BQ6UX53 244 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 FAM228AQ86W67 206 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 NAXDQ8IW45 347 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 MINDY1Q8N5J2 469 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 NRACQ8N912 160 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 SNRNP27Q8WVK2 155 aaKnown RBP6.06□□□□□ -1.44
RTF1-204ENST00000558117 ZFPM2Q8WW38 1151 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 ING5Q8WYH8 240 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 CPT1BQ92523 772 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 ATP2A3Q93084 1043 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 MSANTD3Q96H12 275 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 ZFYVE19Q96K21 471 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 TUBB6Q9BUF5 446 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 PXMP2Q9NR77 195 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 PAPOLBQ9NRJ5 636 aaKnown RBP6.06□□□□□ -1.44
RTF1-204ENST00000558117 GDE1Q9NZC3 331 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 DNAJB4Q9UDY4 337 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 STK39Q9UEW8 545 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 HS3ST3B1Q9Y662 390 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 ATRQ13535 2644 aa6.06□□□□□ -1.44
RTF1-204ENST00000558117 PI4KAP42356 2102 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 BAZ2AQ9UIF9 1905 aaKnown RBP6.05□□□□□ -1.44
RTF1-204ENST00000558117 FAM90A20PA6NIJ5 464 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 ZNF500O60304 480 aaPredicted RBP6.05□□□□□ -1.44
RTF1-204ENST00000558117 ATP9AO75110 1047 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 MBD4O95243 580 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 URODP06132 367 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 HNRNPA1P09651 372 aaKnown RBP eCLIP6.05□□□□□ -1.44
RTF1-204ENST00000558117 SCP2P22307 547 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 ME1P48163 572 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 CCDC173Q0VFZ6 552 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 TMEM88Q6PEY1 159 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 ARFGAP1Q8N6T3 406 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 ZNF366Q8N895 744 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 FAM47BQ8NA70 645 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 OR52N4Q8NGI2 321 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 TRAPPC12Q8WVT3 735 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 NXPE2Q96DL1 559 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 MBOAT7Q96N66 472 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 PIMREGQ9BSJ6 248 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 HERC2P3Q9BVR0 1158 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 C8orf33Q9H7E9 229 aaPredicted RBP6.05□□□□□ -1.44
RTF1-204ENST00000558117 STARD5Q9NSY2 213 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 POT1Q9NUX5 634 aa6.05□□□□□ -1.44
RTF1-204ENST00000558117 NDUFAF4Q9P032 175 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms