RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 SLC7A9P82251 487 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 GSTM4Q03013 218 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 SEL1L3Q68CR1 1132 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 CLEC6AQ6EIG7 209 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 FAM45BPQ6NSW5 357 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 NET1Q7Z628 596 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-212ENST00000554467 TTC30BQ8N4P2 665 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 C12orf76Q8N812 135 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-212ENST00000554467 FAM45AQ8TCE6 357 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 SPPL3Q8TCT6 385 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 LPGAT1Q92604 370 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 USP13Q92995 863 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-212ENST00000554467 ESAMQ96AP7 390 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 MYO19Q96H55 970 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 DNAJC28Q9NX36 388 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 MID2Q9UJV3 735 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 TRIOO75962 3097 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 DENND4CQ5VZ89 1909 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 C1orf232A0A0U1RR37 186 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 MATN2O00339 956 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 ZNF821O75541 412 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-212ENST00000554467 SUPT7LO94864 414 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 CLDN7O95471 211 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 PPIGQ13427 754 aaKnown RBP eCLIP11.61□□□□□ -0.553e-8■□□□□ 10.3
SHMT2-212ENST00000554467 CAMK1Q14012 370 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 PFKFB4Q16877 469 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 LSM12Q3MHD2 195 aaKnown RBP11.61□□□□□ -0.55
SHMT2-212ENST00000554467 SETMARQ53H47 684 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-212ENST00000554467 ARMC12Q5T9G4 340 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 RETSATQ6NUM9 610 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 AFTPHQ6ULP2 937 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 TSPAN33Q86UF1 283 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 HOMEZQ8IX15 550 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 AARSD1Q9BTE6 412 aaKnown RBP11.61□□□□□ -0.55
SHMT2-212ENST00000554467 CCDC68Q9H2F9 335 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 ZNF711Q9Y462 761 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 ARIH1Q9Y4X5 557 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-212ENST00000554467 WNT6Q9Y6F9 365 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 MOSPD3O75425 235 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 IPO13O94829 963 aaKnown RBP11.6□□□□□ -0.55
SHMT2-212ENST00000554467 CD1DP15813 335 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 ZNF37AP17032 561 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-212ENST00000554467 UGT1A6P19224 532 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 UGT1A1P22309 533 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 UGT1A4P22310 534 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 UGT1A3P35503 534 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 UGT1A5P35504 534 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 POLD2P49005 469 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 PFKPQ01813 784 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 MED21Q13503 144 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 PDK3Q15120 406 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 MYLK3Q32MK0 819 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 NADK2Q4G0N4 442 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 MPPE1Q53F39 396 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 INO80DQ53TQ3 878 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-212ENST00000554467 ZNF362Q5T0B9 420 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-212ENST00000554467 RNF148Q8N7C7 305 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 NSUN5Q96P11 429 aaKnown RBP11.6□□□□□ -0.55
SHMT2-212ENST00000554467 BBS2Q9BXC9 721 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 MTG2Q9H4K7 406 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 MYOCOSA0A1B0GUC4 107 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 CDC7O00311 574 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 HDAC3O15379 428 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 SLC5A2P31639 672 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 CREMQ03060 361 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 BCL2L1Q07817 233 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 NSUN2Q08J23 767 aaKnown RBP eCLIP11.6□□□□□ -0.55
SHMT2-212ENST00000554467 POM121L1PQ3SYA9 428 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 FUT11Q495W5 492 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 CLDN19Q8N6F1 224 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 GPR150Q8NGU9 434 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 BOCQ9BWV1 1114 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 UTP6Q9NYH9 597 aaKnown RBP11.6□□□□□ -0.55
SHMT2-212ENST00000554467 CDH22Q9UJ99 828 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 PTGDR2Q9Y5Y4 395 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 ATP6AP2A0A1C7CYW4 349 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 LINC01553A4QN01 128 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 UBFD1O14562 309 aaKnown RBP11.6□□□□□ -0.55
SHMT2-212ENST00000554467 CFLARO15519 480 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 ATP6AP2O75787 350 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 TM7SF2O76062 418 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 PGLSO95336 258 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 ALOX15P16050 662 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-212ENST00000554467 CHRM3P20309 590 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 PEX2P28328 305 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 AP2B1P63010 937 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 PRKAA1Q13131 559 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 GK3PQ14409 553 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 ACAP2Q15057 778 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 TSNQ15631 228 aaKnown RBP11.6□□□□□ -0.55
SHMT2-212ENST00000554467 TYSND1Q2T9J0 566 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 PITRM1Q5JRX3 1037 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 RFLNAQ6ZTI6 216 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 ZNF366Q8N895 744 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 ARL10Q8N8L6 244 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 PTGR2Q8N8N7 351 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-212ENST00000554467 KDM1BQ8NB78 822 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 GRIN3AQ8TCU5 1115 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 PIH1D2Q8WWB5 315 aa11.6□□□□□ -0.55
SHMT2-212ENST00000554467 BIRC8Q96P09 236 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms