RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SCML4Q8N228 414 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 C2CD4AQ8NCU7 369 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 OR6P1Q8NGX9 317 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 BPIFB1Q8TDL5 484 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 TWIST2Q8WVJ9 160 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 STON2Q8WXE9 905 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ELMO1Q92556 727 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 TUBGCP3Q96CW5 907 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 FAR2Q96K12 515 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 UBXN10Q96LJ8 280 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 FSD1LQ9BXM9 530 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 AP5M1Q9H0R1 490 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 MID1IP1Q9NPA3 183 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ADARB2Q9NS39 739 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 TREX1Q9NSU2 369 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 INTS10Q9NVR2 710 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 KLHL3Q9UH77 587 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ANAPC2Q9UJX6 822 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 BAG5Q9UL15 447 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 KIAA1257Q9ULG3 409 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 UBQLN1Q9UMX0 589 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ERVK-11Q9UQG0 969 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 U3KQV3 271 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 VCANP13611 3396 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 SCN4AP35499 1836 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 MICAL3Q7RTP6 2002 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 A0A0G2JMZ2 1700 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 LRRC37A2A6NM11 1700 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 PCM1Q15154 2024 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 FZD9O00144 591 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 MITFO75030 526 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 GUCY1B2O75343 617 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 B3GAT3O94766 335 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 NADKO95544 446 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 GOT2P00505 430 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 MYCP01106 439 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 MTHFD2P13995 350 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 IMPDH1P20839 514 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 PAX3P23760 479 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 GSTM2P28161 218 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 RPL34P49207 117 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 SOX4Q06945 474 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 GPR162Q16538 588 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 SMN1Q16637 294 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 PFKFB4Q16877 469 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 LRIT3Q3SXY7 679 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ARL13BQ3SXY8 428 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 PCID2Q5JVF3 399 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 C6orf141Q5SZD1 244 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 UBE2UQ5VVX9 321 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 UGT3A1Q6NUS8 523 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 DCP1BQ8IZD4 617 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 CLEC4FQ8N1N0 589 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 FAM83FQ8NEG4 500 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 OR2T11Q8NH01 316 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 PSMA8Q8TAA3 256 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 FAR1Q8WVX9 515 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 LPPQ93052 612 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 UBE2FQ969M7 185 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 MUL1Q969V5 352 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 TP53INP1Q96A56 240 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 CCDC138Q96M89 665 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 PPM1MQ96MI6 270 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 BARD1Q99728 777 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 HOPXQ9BPY8 73 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ULBP1Q9BZM6 244 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 TRIT1Q9H3H1 467 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 MROH8Q9H579 483 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 NOL6Q9H6R4 1146 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 SDR39U1Q9NRG7 319 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 FAM118AQ9NWS6 357 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ANKMY1Q9P2S6 941 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 SUN2Q9UH99 717 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 CPA4Q9UI42 421 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ZNF225Q9UK10 706 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 BOLA1Q9Y3E2 137 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ASB1Q9Y576 335 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 MAGEB16A2A368 324 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ANKRD34BA5PLL1 514 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 TTC34A8MYJ7 566 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 GMNNO75496 209 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 HMBSP08397 361 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 LTA4HP09960 611 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 EPHA2P29317 976 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 GGT5P36269 586 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 MASP1P48740 699 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 STX1BP61266 288 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 RACK1P63244 317 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 TSPY1Q01534 308 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 KCNAB2Q13303 367 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ZNF846Q147U1 533 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 PSMD5Q16401 504 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 VARS2Q5ST30 1063 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 IRAK1BP1Q5VVH5 260 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 KIAA0408Q6ZU52 694 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 THAP5Q7Z6K1 395 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ZDHHC17Q8IUH5 632 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 MIER2Q8N344 545 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 TTC39CQ8N584 583 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms