RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 COPG2Q9UBF2 871 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 SLC9A2Q9UBY0 812 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 CHORDC1Q9UHD1 332 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-205ENST00000550592 PTGDR2Q9Y5Y4 395 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 ZNF521Q96K83 1311 aa4.91□□□□□ -1.62
LIMA1-205ENST00000550592 COL22A1Q8NFW1 1626 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-205ENST00000550592 MARF1Q9Y4F3 1742 aaKnown RBP4.9□□□□□ -1.62
LIMA1-205ENST00000550592 A0A1W2PR77 199 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 CPED1A4D0V7 1026 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 SYNDIG1LA6NDD5 238 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 OGG1O15527 345 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 GPC4O75487 556 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 CSPG5O95196 566 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 TOMM40O96008 361 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 STX2P32856 288 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 ZNF81P51508 661 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 PNLIPRP2P54317 469 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 RRP1P56182 461 aaKnown RBP4.9□□□□□ -1.63
LIMA1-205ENST00000550592 ZNF805Q5CZA5 627 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 GPR139Q6DWJ6 353 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 NAA16Q6N069 864 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-205ENST00000550592 CRELD2Q6UXH1 353 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-205ENST00000550592 FOXRED2Q8IWF2 684 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 MCEMP1Q8IX19 187 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 PRR26Q8N8Z3 221 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 PRPF31Q8WWY3 499 aaKnown RBP4.9□□□□□ -1.63
LIMA1-205ENST00000550592 FIZ1Q96SL8 496 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 DCLK3Q9C098 648 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 HRH4Q9H3N8 390 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 OSGEPL1Q9H4B0 414 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 EBF3Q9H4W6 596 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 HIF1ANQ9NWT6 349 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 AGO1Q9UL18 857 aaKnown RBP4.9□□□□□ -1.63
LIMA1-205ENST00000550592 PADI1Q9ULC6 663 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 PTRH2Q9Y3E5 179 aaKnown RBP4.9□□□□□ -1.63
LIMA1-205ENST00000550592 ATXN2Q99700 1313 aaKnown RBP4.9□□□□□ -1.63
LIMA1-205ENST00000550592 KAT6BQ8WYB5 2073 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 PIK3C2BO00750 1634 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 MTUS2Q5JR59 1369 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 MAP3K5Q99683 1374 aa4.9□□□□□ -1.63
LIMA1-205ENST00000550592 TNS2Q63HR2 1409 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 LRRC72A6NJI9 287 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 A8MV72 311 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-205ENST00000550592 H3BNX3 289 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 M0QZ24 198 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 SMAD9O15198 467 aaKnown RBP4.89□□□□□ -1.63
LIMA1-205ENST00000550592 ADAM20O43506 726 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 DNTTP04053 509 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 ICAM1P05362 532 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 TSPY4P0CV99 314 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 TSPY10P0CW01 314 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 MMP14P50281 582 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 GPR143P51810 404 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 PGGT1BP53609 377 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 TDRD12Q587J7 1177 aaKnown RBP4.89□□□□□ -1.63
LIMA1-205ENST00000550592 TMEM198Q66K66 360 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 TYW3Q6IPR3 259 aaKnown RBP4.89□□□□□ -1.63
LIMA1-205ENST00000550592 KBTBD6Q86V97 674 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 EPHX4Q8IUS5 362 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 LINC00346Q8IVM7 164 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 DSELQ8IZU8 1212 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 TMTC2Q8N394 836 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 OIT3Q8WWZ8 545 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 APBB2Q92870 758 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 MOAP1Q96BY2 351 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 GAD1Q99259 594 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 SLC25A33Q9BSK2 321 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 TXLNGYQ9BZA5 131 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 PIGMQ9H3S5 423 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 C17orf75Q9HAS0 396 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 EPB41L5Q9HCM4 733 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 PAG1Q9NWQ8 432 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 ARHGEF38Q9NXL2 777 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 MARCH4Q9P2E8 410 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-205ENST00000550592 OR14J1Q9UGF5 321 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 INSL5Q9Y5Q6 135 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 SQORQ9Y6N5 450 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 NPHP3Q7Z494 1330 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 CCNB3Q8WWL7 1395 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 ARHGAP31Q2M1Z3 1444 aa4.89□□□□□ -1.63
LIMA1-205ENST00000550592 C1orf167Q5SNV9 1468 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 KANSL1LA0AUZ9 987 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 GLOD5A6NK44 160 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 ADAMDEC1O15204 470 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 NDUFS7O75251 213 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 TOMM70O94826 608 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 CH25HO95992 272 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 TRIM21P19474 475 aaKnown RBP4.88□□□□□ -1.63
LIMA1-205ENST00000550592 FASLGP48023 281 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 SUOXP51687 545 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 CSNK2A1P68400 391 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-205ENST00000550592 CALD1Q05682 793 aaKnown RBP4.88□□□□□ -1.63
LIMA1-205ENST00000550592 SREBF2Q12772 1141 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 KCNC3Q14003 757 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 BAATQ14032 418 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-205ENST00000550592 DECR1Q16698 335 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 C15orf59Q2T9L4 293 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-205ENST00000550592 AMZ1Q400G9 498 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 BMP2KLQ5H9B9 411 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 FAM69BQ5VUD6 431 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms