RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 MATR3P43243 847 aaKnown RBP eCLIP4.09□□□□□ -1.75
VPS29-205ENST00000548539 AMTP48728 403 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 RAD23BP54727 409 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 CXCL9Q07325 125 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 MAD2L1Q13257 205 aaPredicted RBP4.09□□□□□ -1.75
VPS29-205ENST00000548539 BAATQ14032 418 aaPredicted RBP4.09□□□□□ -1.75
VPS29-205ENST00000548539 KRT33BQ14525 404 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 C15orf59Q2T9L4 293 aaPredicted RBP4.09□□□□□ -1.75
VPS29-205ENST00000548539 AMZ1Q400G9 498 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 KCNT1Q5JUK3 1230 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 C1orf141Q5JVX7 400 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 FJX1Q86VR8 437 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 EPHX4Q8IUS5 362 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 PRR26Q8N8Z3 221 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 ZNF622Q969S3 477 aaKnown RBP eCLIP4.09□□□□□ -1.75
VPS29-205ENST00000548539 PGAP3Q96FM1 320 aaPredicted RBP4.09□□□□□ -1.75
VPS29-205ENST00000548539 ZMAT2Q96NC0 199 aaKnown RBP4.09□□□□□ -1.75
VPS29-205ENST00000548539 DGAT2Q96PD7 388 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 PCYT2Q99447 389 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 CCDC106Q9BWC9 280 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 RTN4RQ9BZR6 473 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 SPRY4Q9C004 299 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 OR10A4Q9H209 315 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 PSD3Q9NYI0 1048 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 TAS2R14Q9NYV8 317 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 DBNLQ9UJU6 430 aaKnown RBP4.09□□□□□ -1.75
VPS29-205ENST00000548539 ZHX1Q9UKY1 873 aaPredicted RBP4.09□□□□□ -1.75
VPS29-205ENST00000548539 ACSL5Q9ULC5 683 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 PADI3Q9ULW8 664 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 SNX9Q9Y5X1 595 aa4.09□□□□□ -1.75
VPS29-205ENST00000548539 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.09□□□□□ -1.75
VPS29-205ENST00000548539 LOC100509620A0A075B734 347 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 GPR75-ASB3A0A0A6YYF3 556 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 URADA6NGE7 173 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 H7C0S8 307 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 CLGNO14967 610 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 SMAD6O43541 496 aaKnown RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 SERPINI2O75830 405 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 CSPG5O95196 566 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 GGPS1O95749 300 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 CRYABP02511 175 aaKnown RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 AFPP02771 609 aaKnown RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 PRLRP16471 622 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 DNASE1P24855 282 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 HOXD3P31249 432 aaPredicted RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 APOBEC1P41238 236 aaKnown RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 PCYT1AP49585 367 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 HNRNPH2P55795 449 aaKnown RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 TAS2R38P59533 333 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 DHX34Q14147 1143 aaKnown RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 KYNUQ16719 465 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 LETM2Q2VYF4 491 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 MYLK3Q32MK0 819 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 LEXMQ3ZCV2 418 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 FAM98BQ52LJ0 330 aaKnown RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 FAM133BQ5BKY9 247 aaKnown RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 C9orf152Q5JTZ5 239 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 KRT79Q5XKE5 535 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 RGMBQ6NW40 437 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 C18orf65Q6ZTR6 163 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 FBXO39Q8N4B4 442 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 ACVR1CQ8NER5 493 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 OR6J1Q8NGC5 347 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 DUSP19Q8WTR2 217 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 PTPMT1Q8WUK0 201 aaPredicted RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 LPGAT1Q92604 370 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 ATXN2Q99700 1313 aaKnown RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 SEMA3CQ99985 751 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 SLC25A33Q9BSK2 321 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 HGH1Q9BTY7 390 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 SF3B5Q9BWJ5 86 aaKnown RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 ANKRD2Q9GZV1 360 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 GOLPH3LQ9H4A5 285 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 RAD21L1Q9H4I0 556 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 RABEP2Q9H5N1 569 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 ZCCHC17Q9NP64 241 aaKnown RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 BCCIPQ9P287 314 aaKnown RBP eCLIP4.08□□□□□ -1.76
VPS29-205ENST00000548539 C5AR2Q9P296 337 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 WDR35Q9P2L0 1181 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 DNAJB4Q9UDY4 337 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 HACL1Q9UJ83 578 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 AGO1Q9UL18 857 aaKnown RBP4.08□□□□□ -1.76
VPS29-205ENST00000548539 MYO6Q9UM54 1294 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 ZNF148Q9UQR1 794 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 KLHL20Q9Y2M5 609 aa4.08□□□□□ -1.76
VPS29-205ENST00000548539 EME2A4GXA9 379 aaPredicted RBP4.07□□□□□ -1.76
VPS29-205ENST00000548539 HS3ST1O14792 307 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 DDNO94850 711 aaPredicted RBP4.07□□□□□ -1.76
VPS29-205ENST00000548539 GH2P01242 217 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 TPOP07202 933 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 CPT2P23786 658 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 NMBRP28336 390 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 IL11RAQ14626 422 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 PSMD6Q15008 389 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 MEP1AQ16819 746 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 FAM69BQ5VUD6 431 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 FRG2Q64ET8 278 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 TMEM211Q6ICI0 200 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 FAM47EQ6ZV65 393 aa4.07□□□□□ -1.76
VPS29-205ENST00000548539 HAUS6Q7Z4H7 955 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms