RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 LZTR1Q8N653 840 aa15.13■□□□□ 0.01
CLSTN3-216ENST00000545663 AP2M1Q96CW1 435 aa15.13■□□□□ 0.01
CLSTN3-216ENST00000545663 SLC41A2Q96JW4 573 aa15.13■□□□□ 0.01
CLSTN3-216ENST00000545663 SMIM14Q96QK8 99 aa15.13■□□□□ 0.01
CLSTN3-216ENST00000545663 NLNQ9BYT8 704 aa15.13■□□□□ 0.01
CLSTN3-216ENST00000545663 GOLPH3LQ9H4A5 285 aa15.13■□□□□ 0.01
CLSTN3-216ENST00000545663 UCK1Q9HA47 277 aa15.13■□□□□ 0.01
CLSTN3-216ENST00000545663 LMBRD1Q9NUN5 540 aa15.13■□□□□ 0.01
CLSTN3-216ENST00000545663 TMEM51Q9NW97 253 aa15.13■□□□□ 0.01
CLSTN3-216ENST00000545663 ZNF624Q9P2J8 865 aaPredicted RBP15.13■□□□□ 0.01
CLSTN3-216ENST00000545663 SIK3Q9Y2K2 1263 aa15.13■□□□□ 0.01
CLSTN3-216ENST00000545663 PCDHGC4Q9Y5F7 938 aa15.13■□□□□ 0.01
CLSTN3-216ENST00000545663 PCDHGB6Q9Y5F9 930 aa15.13■□□□□ 0.01
CLSTN3-216ENST00000545663 VPS13CQ709C8 3753 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 WASH4PA8MWX3 477 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 MEN1O00255 615 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 GADD45BO75293 160 aaPredicted RBP15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 JRKO75564 520 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 PALMO75781 387 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 RAB40ALP0C0E4 278 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 PNMA6AP0CW24 399 aaPredicted RBP15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 OTX2P32243 289 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 SLC19A1P41440 591 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 CAPZBP47756 277 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 CDSNQ15517 529 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 GPR19Q15760 415 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 CCDC14Q49A88 953 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 DCAF10Q5QP82 559 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 TMEM126BQ8IUX1 230 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 ZNF808Q8N4W9 903 aaPredicted RBP15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 ZDHHC12Q96GR4 267 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 COX14Q96I36 57 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 CELF6Q96J87 481 aaKnown RBP15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 ZNF514Q96K75 400 aaPredicted RBP15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 SLX1AQ9BQ83 275 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 CRACR2AQ9BSW2 395 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 RMND1Q9NWS8 449 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 KCTD5Q9NXV2 234 aa15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 PRRC2AP48634 2157 aaKnown RBP15.12■□□□□ 0.01
CLSTN3-216ENST00000545663 STAB1Q9NY15 2570 aa15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 A0A1W2PQJ5 194 aa15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 DDX3YO15523 660 aaKnown RBP15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 VIPP01282 170 aa15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 XRCC1P18887 633 aaPredicted RBP15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 SCNN1AP37088 669 aa15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 MRGPREQ86SM8 312 aa15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 UMODL1-AS1Q8N2C9 162 aa15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 TTC30BQ8N4P2 665 aa15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 GPT2Q8TD30 523 aa15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 C14orf79Q96F83 325 aa15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 WDR77Q9BQA1 342 aaPredicted RBP15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 MCCC2Q9HCC0 563 aa15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 SEMA3GQ9NS98 782 aa15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 FBN1P35555 2871 aaKnown RBP15.11■□□□□ 0.01
CLSTN3-216ENST00000545663 COL6A5A8TX70 2615 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 TRGV8A0A0C4DH27 118 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 OR5K4A6NMS3 321 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 CCL21O00585 134 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 KLK3P07288 261 aaPredicted RBP15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 SLC2A4P14672 509 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 CTPS1P17812 591 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 SRSF11Q05519 484 aaKnown RBP15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 LRRC63Q05C16 580 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 Q0VFX4 171 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 CDC16Q13042 620 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 SKOR2Q2VWA4 1001 aaPredicted RBP15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 CYB5D1Q6P9G0 228 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 FAM198BQ6UWH4 519 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 DSELQ8IZU8 1212 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 RXFP2Q8WXD0 754 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 TM9SF4Q92544 642 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 GSDMAQ96QA5 445 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 RIOK2Q9BVS4 552 aaKnown RBP15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 LRRC19Q9H756 370 aa15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 METTL5Q9NRN9 209 aaKnown RBP15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 CNOT6Q9ULM6 557 aaKnown RBP15.1■□□□□ 0.01
CLSTN3-216ENST00000545663 FLNAP21333 2647 aaKnown RBP15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 CCDC78A2IDD5 438 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 TMEM200CA6NKL6 621 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 CREB3O43889 395 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 CPP00450 1065 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 SLC9A1P19634 815 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 TSFMP43897 325 aaKnown RBP15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 PAPOLAP51003 745 aaKnown RBP15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 ACY1Q03154 408 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 PNOCQ13519 176 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 GPR18Q14330 331 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 SEPT7Q16181 437 aaKnown RBP15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 ARHGAP36Q6ZRI8 547 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 ZNF765Q7L2R6 523 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 ENOSF1Q7L5Y1 443 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 BPHLQ86WA6 291 aaPredicted RBP15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 CEP97Q8IW35 865 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 TRIM48Q8IWZ4 208 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 CLEC1AQ8NC01 280 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 DNAJB14Q8TBM8 379 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 CHTF18Q8WVB6 975 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 MAP3K3Q99759 626 aa15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 CINPQ9BW66 212 aaPredicted RBP15.09■□□□□ 0.01
CLSTN3-216ENST00000545663 SLC39A8Q9C0K1 460 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms