RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 ADAM20O43506 726 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 FRAT2O75474 233 aaPredicted RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 GAGE7O76087 117 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 HSPA4LO95757 839 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 GAGE12FP0CL80 117 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 GAGE12GP0CL81 117 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 GAGE12IP0CL82 117 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 SCG2P13521 617 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 DDX5P17844 614 aaKnown RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 HNRNPH1P31943 449 aaKnown RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 MRPL12P52815 198 aaKnown RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 ART1P52961 327 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 RAD23BP54727 409 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 BNC1Q01954 994 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 CEBPZQ03701 1054 aaKnown RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 AIMP1Q12904 312 aaKnown RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 GAGE1Q13065 139 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 GAGE4Q13068 117 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 TRAF3Q13114 568 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 OLIG2Q13516 323 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 KEAP1Q14145 624 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 DHX34Q14147 1143 aaKnown RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 NFATC4Q14934 902 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 SLC39A14Q15043 492 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 CALCRLQ16602 461 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 KYNUQ16719 465 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 USP41Q3LFD5 358 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 AMZ1Q400G9 498 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 DNAJC21Q5F1R6 531 aaKnown RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 TCP11X2Q5H9J9 407 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 C6orf141Q5SZD1 244 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 JADE1Q6IE81 842 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 METTL2BQ6P1Q9 378 aaKnown RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 B3GNT6Q6ZMB0 384 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 QSOX2Q6ZRP7 698 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 MTSS1LQ765P7 747 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 CCDC80Q76M96 950 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 SDCCAG8Q86SQ7 713 aaPredicted RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 DNAAF5Q86Y56 855 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 POC5Q8NA72 575 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 NEXN-AS1Q8NBZ9 246 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 TCP11Q8WWU5 503 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 PRPF31Q8WWY3 499 aaKnown RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 PSPC1Q8WXF1 523 aaKnown RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 SGCDQ92629 289 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 ZNF653Q96CK0 615 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 METTL2AQ96IZ6 378 aaKnown RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 HARBI1Q96MB7 349 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 WDFY2Q96P53 400 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 IWS1Q96ST2 819 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 FAM110AQ9BQ89 295 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 TMEM47Q9BQJ4 181 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 CRACR2AQ9BSW2 395 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 APOL6Q9BWW8 343 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 MRPL1Q9BYD6 325 aaKnown RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 TKTL2Q9H0I9 626 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 SIL1Q9H173 461 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 TSPY26PQ9H489 355 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 POLR1BQ9H9Y6 1135 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 C17orf75Q9HAS0 396 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 MKKSQ9NPJ1 570 aaPredicted RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 CD93Q9NPY3 652 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 CNGB3Q9NQW8 809 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 HOXC10Q9NYD6 342 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 BARX2Q9UMQ3 279 aaPredicted RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 CEPT1Q9Y6K0 416 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 FAM169AQ9Y6X4 670 aa3.24□□□□□ -1.89
USP28-210ENST00000542033 EIF4G1Q04637 1599 aaKnown RBP3.24□□□□□ -1.89
USP28-210ENST00000542033 CNTNAP2Q9UHC6 1331 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 IGLV5-37A0A075B6J1 123 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 CLEC18AA5D8T8 446 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 ERICH4A6NGS2 130 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 TRIM64CA6NLI5 447 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 C4orf47A7E2U8 309 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 FAM25EA8MYX2 175 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 F8VZ95 297 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 NDUFS3O75489 264 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 CYC1P08574 325 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 QDPRP09417 244 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 TPM1P09493 284 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 IGHV4-30-4P0DP06 118 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 G6PDP11413 515 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 FGF3P11487 239 aaPredicted RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 PLA2G2AP14555 144 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 DAOP14920 347 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 ZNF12P17014 697 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 TMEM11P17152 192 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 HOXD10P28358 340 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 SSTR2P30874 369 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 HOXA13P31271 388 aaPredicted RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 EIF2S3P41091 472 aaKnown RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 PIP4K2AP48426 406 aaPredicted RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 NRIP1P48552 1158 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 METAP2P50579 478 aaKnown RBP eCLIP3.23□□□□□ -1.89
USP28-210ENST00000542033 HSD17B4P51659 736 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 RAD23AP54725 363 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 RRP1P56182 461 aaKnown RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 TUBA1BP68363 451 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 ECT2LQ008S8 904 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 MYBPHQ13203 477 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms