RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ART3Q13508 389 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 REP15Q6BDI9 236 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 UGT3A1Q6NUS8 523 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 LINGO1Q96FE5 620 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 SLC46A2Q9BY10 475 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 MRPL1Q9BYD6 325 aaKnown RBP13.65□□□□□ -0.22
RTN3-210ENST00000540798 ADAMTS6Q9UKP5 1117 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 ST14Q9Y5Y6 855 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 ACOT8O14734 319 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 PRMT5O14744 637 aaPredicted RBP13.65□□□□□ -0.22
RTN3-210ENST00000540798 GPR39O43194 453 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 COQ9O75208 318 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 XRCC1P18887 633 aaPredicted RBP13.65□□□□□ -0.22
RTN3-210ENST00000540798 CA5AP35218 305 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 RANBP1P43487 201 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 DGKKQ5KSL6 1271 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 FUNDC1Q8IVP5 155 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 TMEM199Q8N511 208 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 BHMTQ93088 406 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 ISG20Q96AZ6 181 aaKnown RBP13.65□□□□□ -0.22
RTN3-210ENST00000540798 NUSAP1Q9BXS6 441 aaKnown RBP13.65□□□□□ -0.22
RTN3-210ENST00000540798 ZFYVE1Q9HBF4 777 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 ZDHHC7Q9NXF8 308 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 ZNF225Q9UK10 706 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 ZNF232Q9UNY5 417 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 PPIL1Q9Y3C6 166 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 IRAK3Q9Y616 596 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 SLC30A1Q9Y6M5 507 aa13.65□□□□□ -0.22
RTN3-210ENST00000540798 A0A1W2PRU2 124 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 GPC4O75487 556 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 SNRPB2P08579 225 aaKnown RBP13.64□□□□□ -0.23
RTN3-210ENST00000540798 ENO3P13929 434 aaPredicted RBP13.64□□□□□ -0.23
RTN3-210ENST00000540798 AGKQ53H12 422 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 TAS2R42Q7RTR8 314 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 SNX20Q7Z614 316 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 ZSWIM9Q86XI8 627 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 CPNE9Q8IYJ1 553 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 CBARPQ8N350 705 aaPredicted RBP13.64□□□□□ -0.23
RTN3-210ENST00000540798 PAWRQ96IZ0 340 aaKnown RBP13.64□□□□□ -0.23
RTN3-210ENST00000540798 KCNA7Q96RP8 456 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 SLC25A23Q9BV35 468 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 FBRSL1Q9HCM7 1045 aaKnown RBP13.64□□□□□ -0.23
RTN3-210ENST00000540798 BCAS2O75934 225 aaPredicted RBP13.64□□□□□ -0.23
RTN3-210ENST00000540798 IGSF6O95976 241 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 ADH1AP07327 375 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 ME2P23368 584 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 HNF1BP35680 557 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 EPHA5P54756 1037 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 MS4A2Q01362 244 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 FIBCD1Q8N539 461 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 KREMEN2Q8NCW0 462 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 OR2AP1Q8NGE2 309 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 OR6K2Q8NGY2 324 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 GDPD5Q8WTR4 605 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 ECHDC3Q96DC8 303 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 ATP13A3Q9H7F0 1226 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 IL23AQ9NPF7 189 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 HS3ST2Q9Y278 367 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 ATP6AP2A0A1C7CYW4 349 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 AGAP14A8MT82 685 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 E2F3O00716 465 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 TRIM24O15164 1050 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 VPS4BO75351 444 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 ATP6AP2O75787 350 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 CXCL14O95715 111 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 BAG2O95816 211 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 MLYCDO95822 493 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 SRCP12931 536 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 CCR2P41597 374 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 PSME3P61289 254 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 XKR7Q5GH72 579 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 TRIM68Q6AZZ1 485 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 OGFOD2Q6N063 350 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 IRGCQ6NXR0 463 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 SERPINA9Q86WD7 417 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 GPSM1Q86YR5 675 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.64□□□□□ -0.23
RTN3-210ENST00000540798 CCDC97Q96F63 343 aaPredicted RBP13.64□□□□□ -0.23
RTN3-210ENST00000540798 PLEKHG4BQ96PX9 1271 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 ECSITQ9BQ95 431 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 IL26Q9NPH9 171 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 PLK2Q9NYY3 685 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 NUDT4Q9NZJ9 180 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 POLG2Q9UHN1 485 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 PTGDR2Q9Y5Y4 395 aa13.64□□□□□ -0.23
RTN3-210ENST00000540798 A0A1B0GVG6 124 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 TRIM38O00635 465 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 MATN4O95460 622 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 PRAMEF1O95521 474 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 ESRRBO95718 433 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 RAG1P15918 1043 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 CHRM3P20309 590 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 GKP32189 559 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 AGTR2P50052 363 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 NFATC2Q13469 925 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 PITRM1Q5JRX3 1037 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 LYPLAL1Q5VWZ2 237 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 SYVN1Q86TM6 617 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 TUBGCP5Q96RT8 1024 aa13.63□□□□□ -0.23
RTN3-210ENST00000540798 CCDC167Q9P0B6 97 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms