RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 MRTO4Q9UKD2 239 aaKnown RBP14.01□□□□□ -0.17
USP3-204ENST00000540797 STYXL1Q9Y6J8 313 aa14.01□□□□□ -0.17
USP3-204ENST00000540797 AP3D1O14617 1153 aa14□□□□□ -0.17
USP3-204ENST00000540797 SERPINA6P08185 405 aa14□□□□□ -0.17
USP3-204ENST00000540797 ITGAXP20702 1163 aa14□□□□□ -0.17
USP3-204ENST00000540797 RNF43Q68DV7 783 aa14□□□□□ -0.17
USP3-204ENST00000540797 MED27Q6P2C8 311 aa14□□□□□ -0.17
USP3-204ENST00000540797 PRR23BQ6ZRT6 265 aa14□□□□□ -0.17
USP3-204ENST00000540797 FAM129CQ86XR2 697 aa14□□□□□ -0.17
USP3-204ENST00000540797 DHRSXQ8N5I4 330 aa14□□□□□ -0.17
USP3-204ENST00000540797 IRF7Q92985 503 aa14□□□□□ -0.17
USP3-204ENST00000540797 RAD51AP1Q96B01 352 aa14□□□□□ -0.17
USP3-204ENST00000540797 C12orf66Q96MD2 445 aa14□□□□□ -0.17
USP3-204ENST00000540797 PPIEQ9UNP9 301 aaKnown RBP14□□□□□ -0.17
USP3-204ENST00000540797 CAB39Q9Y376 341 aaPredicted RBP14□□□□□ -0.17
USP3-204ENST00000540797 HEBP2Q9Y5Z4 205 aa14□□□□□ -0.17
USP3-204ENST00000540797 BUD31P41223 144 aaPredicted RBP14□□□□□ -0.17
USP3-204ENST00000540797 SMIM11AP58511 58 aa14□□□□□ -0.17
USP3-204ENST00000540797 ANGPT1Q15389 498 aa14□□□□□ -0.17
USP3-204ENST00000540797 EIF3MQ7L2H7 374 aaKnown RBP14□□□□□ -0.17
USP3-204ENST00000540797 FGD2Q7Z6J4 655 aa14□□□□□ -0.17
USP3-204ENST00000540797 AMZ2Q86W34 360 aa14□□□□□ -0.17
USP3-204ENST00000540797 TTC29Q8NA56 475 aaPredicted RBP14□□□□□ -0.17
USP3-204ENST00000540797 DEPDC7Q96QD5 511 aa14□□□□□ -0.17
USP3-204ENST00000540797 DZANK1Q9NVP4 752 aa14□□□□□ -0.17
USP3-204ENST00000540797 MAT2BQ9NZL9 334 aa14□□□□□ -0.17
USP3-204ENST00000540797 NR2E1Q9Y466 385 aa14□□□□□ -0.17
USP3-204ENST00000540797 EDDM13A0A1B0GTR0 161 aa14□□□□□ -0.17
USP3-204ENST00000540797 MYADML2A6NDP7 307 aa14□□□□□ -0.17
USP3-204ENST00000540797 SNAP91O60641 907 aa14□□□□□ -0.17
USP3-204ENST00000540797 ATP6V1G2O95670 118 aa14□□□□□ -0.17
USP3-204ENST00000540797 HLA-DQB2P05538 268 aa14□□□□□ -0.17
USP3-204ENST00000540797 FAM58BPP0C7Q3 252 aa14□□□□□ -0.17
USP3-204ENST00000540797 CCNYL3P0C7X3 344 aa14□□□□□ -0.17
USP3-204ENST00000540797 IL1R2P27930 398 aa14□□□□□ -0.17
USP3-204ENST00000540797 SLC10A7Q0GE19 358 aa14□□□□□ -0.17
USP3-204ENST00000540797 INO80DQ53TQ3 878 aaPredicted RBP14□□□□□ -0.17
USP3-204ENST00000540797 EOGTQ5NDL2 527 aa14□□□□□ -0.17
USP3-204ENST00000540797 SPATA19Q7Z5L4 167 aa14□□□□□ -0.17
USP3-204ENST00000540797 SNX20Q7Z614 316 aa14□□□□□ -0.17
USP3-204ENST00000540797 CPNE9Q8IYJ1 553 aa14□□□□□ -0.17
USP3-204ENST00000540797 ZNF366Q8N895 744 aa14□□□□□ -0.17
USP3-204ENST00000540797 BRINP2Q9C0B6 783 aa14□□□□□ -0.17
USP3-204ENST00000540797 EXD2Q9NVH0 621 aa14□□□□□ -0.17
USP3-204ENST00000540797 LYVE1Q9Y5Y7 322 aa14□□□□□ -0.17
USP3-204ENST00000540797 hCG_2014768A0A024R1R8 64 aa14□□□□□ -0.17
USP3-204ENST00000540797 OR1F1O43749 312 aa14□□□□□ -0.17
USP3-204ENST00000540797 C8GP07360 202 aa14□□□□□ -0.17
USP3-204ENST00000540797 TYRP14679 529 aa14□□□□□ -0.17
USP3-204ENST00000540797 MLLT6P55198 1093 aaPredicted RBP14□□□□□ -0.17
USP3-204ENST00000540797 MTAPQ13126 283 aa14□□□□□ -0.17
USP3-204ENST00000540797 UPP1Q16831 310 aa14□□□□□ -0.17
USP3-204ENST00000540797 TIGD2Q4W5G0 525 aa14□□□□□ -0.17
USP3-204ENST00000540797 OR2AP1Q8NGE2 309 aa14□□□□□ -0.17
USP3-204ENST00000540797 ZC4H2Q9NQZ6 224 aa14□□□□□ -0.17
USP3-204ENST00000540797 KRT33AO76009 404 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 SLC35G6P0C7Q6 338 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 ZNF132P52740 706 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 INCA1Q0VD86 236 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 NCBP2-AS2Q69YL0 99 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 ENPP7Q6UWV6 458 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 Q6ZVU0 165 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 LPCAT2Q7L5N7 544 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 RCN3Q96D15 328 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 ZNF514Q96K75 400 aaPredicted RBP13.99□□□□□ -0.17
USP3-204ENST00000540797 LMAN2LQ9H0V9 348 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 CRTAC1Q9NQ79 661 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 OSER1Q9NX31 292 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 ZNF180Q9UJW8 692 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 TIMM22Q9Y584 194 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 LEFTY2O00292 366 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 SLC6A2P23975 617 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 ACVRL1P37023 503 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 GRM2Q14416 872 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 TSNQ15631 228 aaKnown RBP13.99□□□□□ -0.17
USP3-204ENST00000540797 SULT1C3Q6IMI6 304 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 FSTL4Q6MZW2 842 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 OLFML1Q6UWY5 402 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 DENND6AQ8IWF6 608 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 SVOPQ8N4V2 548 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 INTS10Q9NVR2 710 aaKnown RBP13.99□□□□□ -0.17
USP3-204ENST00000540797 FNIP2Q9P278 1114 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 TPRKBQ9Y3C4 175 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 CLDN4O14493 209 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 RGS20O76081 388 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 CYBAP13498 195 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 ACTR1BP42025 376 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 ACTR1AP61163 376 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 MRPS15P82914 257 aaKnown RBP13.99□□□□□ -0.17
USP3-204ENST00000540797 GTF2H2Q13888 395 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 KIAA0930Q6ICG6 404 aaPredicted RBP13.99□□□□□ -0.17
USP3-204ENST00000540797 GTF2H2CQ6P1K8 395 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 WDR36Q8NI36 951 aaKnown RBP13.99□□□□□ -0.17
USP3-204ENST00000540797 C19orf60Q96EN9 201 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 PTCD3Q96EY7 689 aaKnown RBP13.99□□□□□ -0.17
USP3-204ENST00000540797 SMG9Q9H0W8 520 aaKnown RBP13.99□□□□□ -0.17
USP3-204ENST00000540797 ELAC1Q9H777 363 aaKnown RBP13.99□□□□□ -0.17
USP3-204ENST00000540797 TRIM38O00635 465 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 GABRDO14764 452 aa13.99□□□□□ -0.17
USP3-204ENST00000540797 RPL4P36578 427 aaKnown RBP13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms