RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 TRIM39Q9HCM9 518 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 APMAPQ9HDC9 416 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 PRDM8Q9NQV8 689 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 SIDT1Q9NXL6 827 aaKnown RBP11.21□□□□□ -0.61
VPS28-214ENST00000531032 IFNKQ9P0W0 207 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 MAST4O15021 2626 aa11.21□□□□□ -0.62
VPS28-214ENST00000531032 LOC101059948A0A1B0GTJ6 334 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 LRRD1A4D1F6 860 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 PRR19A6NJB7 356 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 C3orf70A6NLC5 250 aaPredicted RBP11.2□□□□□ -0.62
VPS28-214ENST00000531032 ARHGAP6O43182 974 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 STK17BO94768 372 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 SLC25A14O95258 325 aaPredicted RBP11.2□□□□□ -0.62
VPS28-214ENST00000531032 DLGAP3O95886 979 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 C9P02748 559 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 TMEM253P0C7T8 217 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 MAPK9P45984 424 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 CCR10P46092 362 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 ABHD18Q0P651 414 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 MAP7Q14244 749 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 SLC14A2Q15849 920 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 ASTE1Q2TB18 679 aaPredicted RBP11.2□□□□□ -0.62
VPS28-214ENST00000531032 ZFYVE27Q5T4F4 411 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 ALS2CLQ60I27 953 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 TMC3Q7Z5M5 1100 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 ADGRG6Q86SQ4 1221 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 NT5DC3Q86UY8 548 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 PLXDC1Q8IUK5 500 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 TRAM1L1Q8N609 369 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 GLYATL1Q969I3 302 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 OLFM3Q96PB7 478 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 PLEKHG4BQ96PX9 1271 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 EFHD1Q9BUP0 239 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 SPATA16Q9BXB7 569 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 TBC1D10AQ9BXI6 508 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 OR2AG1Q9H205 316 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 TRIT1Q9H3H1 467 aaKnown RBP11.2□□□□□ -0.62
VPS28-214ENST00000531032 ARFGAP3Q9NP61 516 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 RAD18Q9NS91 495 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 KLC4Q9NSK0 619 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 OGFRQ9NZT2 677 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 SCHIP1Q9P0W5 487 aaPredicted RBP11.2□□□□□ -0.62
VPS28-214ENST00000531032 KLHL3Q9UH77 587 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 ZNF711Q9Y462 761 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 HEY1Q9Y5J3 304 aa11.2□□□□□ -0.62
VPS28-214ENST00000531032 ZNF106Q9H2Y7 1883 aaKnown RBP11.2□□□□□ -0.62
VPS28-214ENST00000531032 POLR1CO15160 346 aaPredicted RBP11.19□□□□□ -0.62
VPS28-214ENST00000531032 NKX2-8O15522 239 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 CBFA2T2O43439 604 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 MTA2O94776 668 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 TPM1P09493 284 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 XRCC1P18887 633 aaPredicted RBP11.19□□□□□ -0.62
VPS28-214ENST00000531032 GFERP55789 205 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 TLE1Q04724 770 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 AP1B1Q10567 949 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 CDC20Q12834 499 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 PDK1Q15118 436 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 CRTC2Q53ET0 693 aaPredicted RBP11.19□□□□□ -0.62
VPS28-214ENST00000531032 ZNF648Q5T619 568 aaPredicted RBP11.19□□□□□ -0.62
VPS28-214ENST00000531032 CRTC3Q6UUV7 619 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 TMEM26Q6ZUK4 368 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 ZNF547Q8IVP9 402 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 C9orf72Q96LT7 481 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 DNAJC7Q99615 494 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 TIMM29Q9BSF4 260 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 CEP41Q9BYV8 373 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 BRD8Q9H0E9 1235 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 SLC25A51Q9H1U9 297 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 TSPY26PQ9H489 355 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 OSGEPL1Q9H4B0 414 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 ZNF624Q9P2J8 865 aaPredicted RBP11.19□□□□□ -0.62
VPS28-214ENST00000531032 SLC23A2Q9UGH3 650 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 SHOC2Q9UQ13 582 aa11.19□□□□□ -0.62
VPS28-214ENST00000531032 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.19□□□□□ -0.629e-7■■□□□ 14.3
VPS28-214ENST00000531032 PTPN13Q12923 2485 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 SSU72P8A0A1W2PR75 194 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 CYSRT1A8MQ03 144 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 APOL1O14791 398 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 PPP1R12AO14974 1030 aaPredicted RBP11.18□□□□□ -0.62
VPS28-214ENST00000531032 KMOO15229 486 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 TOX3O15405 576 aaPredicted RBP11.18□□□□□ -0.62
VPS28-214ENST00000531032 VEGFDO43915 354 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 UBXN7O94888 489 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 PIRTP0C851 137 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 ZNF7P17097 686 aaPredicted RBP11.18□□□□□ -0.62
VPS28-214ENST00000531032 BPIP17213 487 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 OAS2P29728 719 aaKnown RBP11.18□□□□□ -0.62
VPS28-214ENST00000531032 SLC19A1P41440 591 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 STAT5AP42229 794 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 ARHGAP25P42331 645 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 CDK18Q07002 472 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 MESDQ14696 234 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 INSCQ1MX18 579 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 PLA2G4EQ3MJ16 856 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 FAM182AQ5T1J6 154 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 WASH2PQ6VEQ5 465 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 KDELC2Q7Z4H8 507 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 LRRTM4Q86VH4 590 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 UNC5BQ8IZJ1 945 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 ESX1Q8N693 406 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms