RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CDKN2DP55273 166 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 CSTF1Q05048 431 aaKnown RBP21.02■□□□□ 0.96
VPS28-212ENST00000530836 ITIH4Q14624 930 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 STARD3Q14849 445 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 ANGPT1Q15389 498 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 CHRNA6Q15825 494 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 UGT3A1Q6NUS8 523 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 MICALCLQ6ZW33 695 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 SERPINA9Q86WD7 417 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 NRSN1Q8IZ57 195 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 CENPLQ8N0S6 344 aaPredicted RBP21.02■□□□□ 0.96
VPS28-212ENST00000530836 KCNJ9Q92806 393 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 BIRC8Q96P09 236 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 PRRX2Q99811 253 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 POLMQ9NP87 494 aaPredicted RBP21.02■□□□□ 0.96
VPS28-212ENST00000530836 COPG2Q9UBF2 871 aa21.02■□□□□ 0.96
VPS28-212ENST00000530836 RUVBL2Q9Y230 463 aaKnown RBP21.02■□□□□ 0.96
VPS28-212ENST00000530836 SCN8AQ9UQD0 1980 aa21.02■□□□□ 0.95
VPS28-212ENST00000530836 ZNF318Q5VUA4 2279 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 WDR91A4D1P6 747 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 VPS26AO75436 327 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 WISP3O95389 354 aaPredicted RBP21.01■□□□□ 0.95
VPS28-212ENST00000530836 TOP3BO95985 862 aaKnown RBP21.01■□□□□ 0.95
VPS28-212ENST00000530836 LTA4HP09960 611 aaKnown RBP21.01■□□□□ 0.95
VPS28-212ENST00000530836 ELFN1P0C7U0 828 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 TDGF1P13385 188 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 ADRB3P13945 408 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 RALGDSQ12967 914 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 PDAP1Q13442 181 aaKnown RBP21.01■□□□□ 0.95
VPS28-212ENST00000530836 C16orf46Q6P387 395 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 TSSK4Q6SA08 328 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 ERN2Q76MJ5 926 aaKnown RBP21.01■□□□□ 0.95
VPS28-212ENST00000530836 NXPE1Q8N323 547 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 TSTD1Q8NFU3 115 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 KCTD4Q8WVF5 259 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 HHIPQ96QV1 700 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 CLPBQ9H078 707 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 RSPH9Q9H1X1 276 aaPredicted RBP21.01■□□□□ 0.95
VPS28-212ENST00000530836 P2RY12Q9H244 342 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 FAM83DQ9H4H8 585 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 CACNA1IQ9P0X4 2223 aa21.01■□□□□ 0.95
VPS28-212ENST00000530836 RHOBTB1O94844 696 aa21■□□□□ 0.95
VPS28-212ENST00000530836 APBB3O95704 486 aa21■□□□□ 0.95
VPS28-212ENST00000530836 ADH1BP00325 375 aa21■□□□□ 0.95
VPS28-212ENST00000530836 CPA3P15088 417 aa21■□□□□ 0.95
VPS28-212ENST00000530836 ACAP2Q15057 778 aa21■□□□□ 0.95
VPS28-212ENST00000530836 LRRC73Q5JTD7 316 aa21■□□□□ 0.95
VPS28-212ENST00000530836 GKAP1Q5VSY0 366 aaPredicted RBP21■□□□□ 0.95
VPS28-212ENST00000530836 LIPIQ6XZB0 460 aa21■□□□□ 0.95
VPS28-212ENST00000530836 MMAAQ8IVH4 418 aaKnown RBP21■□□□□ 0.95
VPS28-212ENST00000530836 ZNF473Q8WTR7 871 aaKnown RBP21■□□□□ 0.95
VPS28-212ENST00000530836 ARRDC3Q96B67 414 aa21■□□□□ 0.95
VPS28-212ENST00000530836 MRPL57Q9BQC6 102 aaKnown RBP21■□□□□ 0.95
VPS28-212ENST00000530836 PITPNM3Q9BZ71 974 aa21■□□□□ 0.95
VPS28-212ENST00000530836 FAM107BQ9H098 131 aa21■□□□□ 0.95
VPS28-212ENST00000530836 SMOXQ9NWM0 555 aa21■□□□□ 0.95
VPS28-212ENST00000530836 GNPTGQ9UJJ9 305 aa21■□□□□ 0.95
VPS28-212ENST00000530836 CCDC189A1A4V9 331 aa21■□□□□ 0.95
VPS28-212ENST00000530836 RBP1P09455 135 aa21■□□□□ 0.95
VPS28-212ENST00000530836 CCDC166P0CW27 439 aa21■□□□□ 0.95
VPS28-212ENST00000530836 PRKAA2P54646 552 aa21■□□□□ 0.95
VPS28-212ENST00000530836 SEMG2Q02383 582 aa21■□□□□ 0.95
VPS28-212ENST00000530836 ZNF460Q14592 562 aa21■□□□□ 0.95
VPS28-212ENST00000530836 POM121L1PQ3SYA9 428 aa21■□□□□ 0.95
VPS28-212ENST00000530836 PNPLA1Q8N8W4 532 aa21■□□□□ 0.95
VPS28-212ENST00000530836 SCYL1Q96KG9 808 aa21■□□□□ 0.95
VPS28-212ENST00000530836 ZSCAN5AQ9BUG6 496 aa21■□□□□ 0.95
VPS28-212ENST00000530836 MRPL46Q9H2W6 279 aaKnown RBP21■□□□□ 0.95
VPS28-212ENST00000530836 ZDHHC3Q9NYG2 299 aa21■□□□□ 0.95
VPS28-212ENST00000530836 EBF1Q9UH73 591 aa21■□□□□ 0.95
VPS28-212ENST00000530836 KMT2EQ8IZD2 1858 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 TCRBV21S2A2A0A5A6 115 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 AREL1O15033 823 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 H2AFYO75367 372 aaKnown RBP20.99■□□□□ 0.95
VPS28-212ENST00000530836 NSG1P42857 185 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 ZNF528Q3MIS6 628 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 TMEM52BQ4KMG9 183 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 LRRC8EQ6NSJ5 796 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 CYP2U1Q7Z449 544 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 HSD11B1LQ7Z5J1 315 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 TECPR1Q7Z6L1 1165 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 FSTL5Q8N475 847 aaPredicted RBP20.99■□□□□ 0.95
VPS28-212ENST00000530836 TRAM1L1Q8N609 369 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 PPP1R14CQ8TAE6 165 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 HEXDCQ8WVB3 486 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 NXNL1Q96CM4 212 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 ERLEC1Q96DZ1 483 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 GPR78Q96P69 363 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 IGSF5Q9NSI5 407 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 FGFR1OP2Q9NVK5 253 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 ZNF358Q9NW07 568 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 KCTD5Q9NXV2 234 aa20.99■□□□□ 0.95
VPS28-212ENST00000530836 OAS3Q9Y6K5 1087 aaKnown RBP20.99■□□□□ 0.95
VPS28-212ENST00000530836 WDFY4Q6ZS81 3184 aa20.98■□□□□ 0.95
VPS28-212ENST00000530836 E5RI56 91 aa20.98■□□□□ 0.95
VPS28-212ENST00000530836 WNT9AO14904 365 aa20.98■□□□□ 0.95
VPS28-212ENST00000530836 OR1I1O60431 355 aa20.98■□□□□ 0.95
VPS28-212ENST00000530836 EDF1O60869 148 aaKnown RBP20.98■□□□□ 0.95
VPS28-212ENST00000530836 SP9P0CG40 484 aa20.98■□□□□ 0.95
VPS28-212ENST00000530836 ZNF37AP17032 561 aaPredicted RBP20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms