RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MTG2Q9H4K7 406 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 EBF3Q9H4W6 596 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 OBP2AQ9NY56 170 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 TAS2R1Q9NYW7 299 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 GDE1Q9NZC3 331 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 CDH22Q9UJ99 828 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 CRLS1Q9UJA2 301 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 STK38LQ9Y2H1 464 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 PRSS21Q9Y6M0 314 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 SCN8AQ9UQD0 1980 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 HEPACAM2A8MVW5 462 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 ECI2O75521 394 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 NFATC1O95644 943 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 CTSLP07711 333 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 RGS19P49795 217 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 MESP2Q0VG99 397 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 PFKFB4Q16877 469 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 ARSIQ5FYB1 569 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 LONP2Q86WA8 852 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 LINGO1Q96FE5 620 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 PDLIM5Q96HC4 596 aaKnown RBP20.51■□□□□ 0.87
VPS28-209ENST00000528142 APOL5Q9BWW9 433 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 RNF112Q9ULX5 631 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 SLC8A2Q9UPR5 921 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 SZT2Q5T011 3432 aa20.51■□□□□ 0.87
VPS28-209ENST00000528142 GOLGA8QA0A0J9YX86 632 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 GOLGA8OA6NCC3 632 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 NPEPPSL1A6NEC2 478 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 E9PBE3 544 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 GOLGA8NF8WBI6 632 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 KLK8O60259 260 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 KLHL41O60662 606 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 SUPT7LO94864 414 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 FCARP24071 287 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 SLC6A11P48066 632 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 LSM12Q3MHD2 195 aaKnown RBP20.5■□□□□ 0.87
VPS28-209ENST00000528142 LRRC73Q5JTD7 316 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 PTRHD1Q6GMV3 140 aaKnown RBP20.5■□□□□ 0.87
VPS28-209ENST00000528142 MACC1Q6ZN28 852 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 GET4Q7L5D6 327 aaPredicted RBP20.5■□□□□ 0.87
VPS28-209ENST00000528142 PARP9Q8IXQ6 854 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 PBXIP1Q96AQ6 731 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 MAELQ96JY0 434 aaKnown RBP20.5■□□□□ 0.87
VPS28-209ENST00000528142 PLEKHG4BQ96PX9 1271 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 CCDC28BQ9BUN5 200 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 CADM1Q9BY67 442 aaKnown RBP20.5■□□□□ 0.87
VPS28-209ENST00000528142 IGFLR1Q9H665 355 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 ELOVL2Q9NXB9 296 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 GTSE1Q9NYZ3 720 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 GNPTGQ9UJJ9 305 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 ZNF106Q9H2Y7 1883 aaKnown RBP20.5■□□□□ 0.87
VPS28-209ENST00000528142 GOLGA8CPA6NN73 597 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 BTN3A1O00481 513 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 NCF2P19878 526 aaPredicted RBP20.5■□□□□ 0.87
VPS28-209ENST00000528142 EPHA3P29320 983 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 CPA2P48052 419 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 SPINT3P49223 89 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 RIPK1Q13546 671 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 ZDHHC20Q5W0Z9 365 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 TMEM184AQ6ZMB5 413 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 RAB44Q7Z6P3 723 aaPredicted RBP20.5■□□□□ 0.87
VPS28-209ENST00000528142 NXPE3Q969Y0 559 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 LRIG1Q96JA1 1093 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 FAR2Q96K12 515 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 SARS2Q9NP81 518 aaKnown RBP20.5■□□□□ 0.87
VPS28-209ENST00000528142 IL36AQ9UHA7 158 aa20.5■□□□□ 0.87
VPS28-209ENST00000528142 SYCE1LA8MT33 242 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 SUPT3HB4E1H0 165 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 PRRT4C9JH25 899 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 NEMP1O14524 444 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 GYG2O15488 501 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 GSC2O15499 205 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 SUPT3HO75486 399 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 SIX3O95343 332 aaPredicted RBP20.49■□□□□ 0.87
VPS28-209ENST00000528142 TIMP2P16035 220 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 HNRNPH1P31943 449 aaKnown RBP20.49■□□□□ 0.87
VPS28-209ENST00000528142 PDCD2Q16342 344 aaPredicted RBP20.49■□□□□ 0.87
VPS28-209ENST00000528142 ACAD11Q709F0 780 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 PHTF2Q8N3S3 785 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 CLDN19Q8N6F1 224 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 TEX9Q8N6V9 391 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 ST13P5Q8NFI4 369 aaPredicted RBP20.49■□□□□ 0.87
VPS28-209ENST00000528142 LKAAEAR1Q8TD35 194 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 HCAR2Q8TDS4 363 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 NAT14Q8WUY8 206 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 MRPL38Q96DV4 380 aaKnown RBP20.49■□□□□ 0.87
VPS28-209ENST00000528142 PPP1R36Q96LQ0 422 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 DKK3Q9UBP4 350 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 CDYLQ9Y232 598 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 C2orf16Q68DN1 1984 aa20.49■□□□□ 0.87
VPS28-209ENST00000528142 LRRC14BA6NHZ5 514 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 TRPC5OSA6NMA1 111 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 B2RBV5 119 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 SPECC1L-ADORA2AF8WAN1 911 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 LINC01565O15544 149 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 GFAPP14136 432 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 ZNF30P17039 623 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 VIPR1P32241 457 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 KDSRQ06136 332 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 ATP13A5Q4VNC0 1218 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms